Variant report

Variant	rs10895144
Chromosome Location	chr11:101444783-101444784
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10219300	0.99[EUR][1000 genomes]
rs10219398	0.99[EUR][1000 genomes]
rs10791501	0.85[ASN][1000 genomes]
rs10791502	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10895138	0.99[EUR][1000 genomes]
rs10895139	0.99[EUR][1000 genomes]
rs10895148	1.00[EUR][1000 genomes]
rs10895160	0.87[EUR][1000 genomes]
rs11224830	0.99[EUR][1000 genomes]
rs11224875	1.00[EUR][1000 genomes]
rs11523959	0.99[EUR][1000 genomes]
rs12280648	0.99[EUR][1000 genomes]
rs12282925	0.99[EUR][1000 genomes]
rs1892873	0.89[EUR][1000 genomes]
rs1938830	0.88[EUR][1000 genomes]
rs1938840	0.95[EUR][1000 genomes]
rs1939449	0.88[EUR][1000 genomes]
rs1939451	0.88[EUR][1000 genomes]
rs1939452	0.88[EUR][1000 genomes]
rs2105612	0.88[EUR][1000 genomes]
rs2154992	0.85[EUR][1000 genomes]
rs2154996	0.95[EUR][1000 genomes]
rs2154997	0.94[EUR][1000 genomes]
rs2186577	0.86[EUR][1000 genomes]
rs2186578	0.88[EUR][1000 genomes]
rs2226558	0.87[EUR][1000 genomes]
rs2508244	0.95[EUR][1000 genomes]
rs2508246	0.94[EUR][1000 genomes]
rs2508250	0.93[EUR][1000 genomes]
rs2508251	0.95[EUR][1000 genomes]
rs2508252	0.94[EUR][1000 genomes]
rs2508254	0.95[EUR][1000 genomes]
rs2508725	0.95[EUR][1000 genomes]
rs2508726	0.95[EUR][1000 genomes]
rs2508727	0.95[EUR][1000 genomes]
rs2508728	0.95[EUR][1000 genomes]
rs2508729	0.95[EUR][1000 genomes]
rs2513191	0.95[EUR][1000 genomes]
rs3018705	0.94[EUR][1000 genomes]
rs3018706	0.93[EUR][1000 genomes]
rs3018707	0.95[EUR][1000 genomes]
rs41302375	0.99[EUR][1000 genomes]
rs4457714	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4469859	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4754778	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4754780	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56134796	0.96[EUR][1000 genomes]
rs56743893	1.00[ASN][1000 genomes]
rs57222897	1.00[ASN][1000 genomes]
rs58720814	0.92[ASN][1000 genomes]
rs61700184	1.00[ASN][1000 genomes]
rs6590880	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6590881	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6590882	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6590893	0.86[EUR][1000 genomes]
rs6590894	0.83[EUR][1000 genomes]
rs7107018	0.87[EUR][1000 genomes]
rs7107512	0.88[EUR][1000 genomes]
rs7112189	0.85[EUR][1000 genomes]
rs7112255	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7112388	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7116889	0.88[EUR][1000 genomes]
rs7119712	0.99[EUR][1000 genomes]
rs7119886	0.82[EUR][1000 genomes]
rs7125321	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7126770	0.86[EUR][1000 genomes]
rs7935364	0.92[ASN][1000 genomes]
rs7938237	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7942189	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951375	1.00[ASN][1000 genomes]
rs947992	0.95[EUR][1000 genomes]
rs9988861	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv898331	chr11:101436689-101492630	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv3489634	chr11:101443892-101446490	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3489635	chr11:101444042-101446102	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3465431	chr11:101444478-101445566	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3489637	chr11:101444510-101445559	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3328819	chr11:101444522-101445538	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3465420	chr11:101444524-101445544	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	esv3465442	chr11:101444524-101445544	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv3465409	chr11:101444534-101445637	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	esv3489636	chr11:101444536-101445556	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv3489638	chr11:101444553-101445498	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
17	esv3489639	chr11:101444553-101445498	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101426400-101447600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:101438400-101445400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:101443800-101446000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:101444200-101445000	Enhancers	NHLF	lung
5	chr11:101444400-101444800	Enhancers	Fetal Lung	lung
6	chr11:101444400-101449200	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links