Variant report

Variant	rs9988861
Chromosome Location	chr11:101438758-101438759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10219300	0.92[EUR][1000 genomes]
rs10219398	0.92[EUR][1000 genomes]
rs10791501	0.85[ASN][1000 genomes]
rs10791502	0.85[ASN][1000 genomes]
rs10895138	0.92[EUR][1000 genomes]
rs10895139	0.92[EUR][1000 genomes]
rs10895144	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895148	0.92[EUR][1000 genomes]
rs11224830	0.92[EUR][1000 genomes]
rs11224875	0.92[EUR][1000 genomes]
rs11523959	0.93[EUR][1000 genomes]
rs12280648	0.92[EUR][1000 genomes]
rs12282925	0.92[EUR][1000 genomes]
rs1892873	0.93[EUR][1000 genomes]
rs1938830	0.81[EUR][1000 genomes]
rs1938840	0.87[EUR][1000 genomes]
rs1938852	0.80[EUR][1000 genomes]
rs1938853	0.80[EUR][1000 genomes]
rs1938854	0.80[EUR][1000 genomes]
rs1938855	0.80[EUR][1000 genomes]
rs1939449	0.81[EUR][1000 genomes]
rs1939451	0.81[EUR][1000 genomes]
rs1939452	0.81[EUR][1000 genomes]
rs2105612	0.81[EUR][1000 genomes]
rs2154996	0.87[EUR][1000 genomes]
rs2154997	0.88[EUR][1000 genomes]
rs2186578	0.81[EUR][1000 genomes]
rs2186579	0.80[EUR][1000 genomes]
rs2508244	0.87[EUR][1000 genomes]
rs2508246	0.87[EUR][1000 genomes]
rs2508250	0.85[EUR][1000 genomes]
rs2508251	0.87[EUR][1000 genomes]
rs2508252	0.86[EUR][1000 genomes]
rs2508254	0.87[EUR][1000 genomes]
rs2508725	0.87[EUR][1000 genomes]
rs2508726	0.87[EUR][1000 genomes]
rs2508727	0.87[EUR][1000 genomes]
rs2508728	0.87[EUR][1000 genomes]
rs2508729	0.87[EUR][1000 genomes]
rs2513191	0.87[EUR][1000 genomes]
rs3018705	0.86[EUR][1000 genomes]
rs3018706	0.85[EUR][1000 genomes]
rs3018707	0.87[EUR][1000 genomes]
rs41302375	0.92[EUR][1000 genomes]
rs4457714	0.85[ASN][1000 genomes]
rs4469859	0.85[ASN][1000 genomes]
rs4754778	0.92[EUR][1000 genomes]
rs4754780	0.92[EUR][1000 genomes]
rs56134796	0.90[EUR][1000 genomes]
rs56743893	1.00[ASN][1000 genomes]
rs57222897	1.00[ASN][1000 genomes]
rs58720814	0.92[ASN][1000 genomes]
rs61700184	1.00[ASN][1000 genomes]
rs6590880	0.85[ASN][1000 genomes]
rs6590881	0.85[ASN][1000 genomes]
rs6590882	0.85[ASN][1000 genomes]
rs7107512	0.81[EUR][1000 genomes]
rs7112255	0.85[ASN][1000 genomes]
rs7112388	1.00[ASN][1000 genomes]
rs7116889	0.81[EUR][1000 genomes]
rs7119712	0.92[EUR][1000 genomes]
rs7125321	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7935364	0.92[ASN][1000 genomes]
rs7938237	1.00[ASN][1000 genomes]
rs7942189	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951375	1.00[ASN][1000 genomes]
rs947992	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2761703	chr11:101406049-101439667	Enhancers Flanking Active TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv898331	chr11:101436689-101492630	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101426400-101447600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:101437000-101444400	Weak transcription	NHDF-Ad	bronchial
3	chr11:101438400-101438800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:101438400-101443400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:101438400-101445400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:101438600-101438800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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