Variant report

Variant	rs7942189
Chromosome Location	chr11:101418944-101418945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10219300	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10219398	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10791501	0.85[ASN][1000 genomes]
rs10791502	0.85[ASN][1000 genomes]
rs10895138	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10895139	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10895144	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895148	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10895160	0.86[EUR][1000 genomes]
rs11224830	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11224875	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11523959	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12280648	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12282925	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1892873	0.89[EUR][1000 genomes]
rs1938830	0.87[EUR][1000 genomes]
rs1938840	0.94[EUR][1000 genomes]
rs1939449	0.87[EUR][1000 genomes]
rs1939451	0.87[EUR][1000 genomes]
rs1939452	0.87[EUR][1000 genomes]
rs2105612	0.87[EUR][1000 genomes]
rs2154992	0.83[EUR][1000 genomes]
rs2154996	0.94[EUR][1000 genomes]
rs2154997	0.94[EUR][1000 genomes]
rs2186577	0.85[EUR][1000 genomes]
rs2186578	0.87[EUR][1000 genomes]
rs2226558	0.86[EUR][1000 genomes]
rs2508244	0.94[EUR][1000 genomes]
rs2508246	0.94[EUR][1000 genomes]
rs2508250	0.92[EUR][1000 genomes]
rs2508251	0.94[EUR][1000 genomes]
rs2508252	0.93[EUR][1000 genomes]
rs2508254	0.94[EUR][1000 genomes]
rs2508725	0.94[EUR][1000 genomes]
rs2508726	0.94[EUR][1000 genomes]
rs2508727	0.94[EUR][1000 genomes]
rs2508728	0.94[EUR][1000 genomes]
rs2508729	0.94[EUR][1000 genomes]
rs2513191	0.94[EUR][1000 genomes]
rs3018705	0.92[EUR][1000 genomes]
rs3018706	0.92[EUR][1000 genomes]
rs3018707	0.94[EUR][1000 genomes]
rs41302375	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4457714	0.85[ASN][1000 genomes]
rs4469859	0.85[ASN][1000 genomes]
rs4754778	1.00[EUR][1000 genomes]
rs4754780	0.99[EUR][1000 genomes]
rs56134796	0.96[EUR][1000 genomes]
rs56743893	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57222897	1.00[ASN][1000 genomes]
rs58720814	0.92[ASN][1000 genomes]
rs61700184	1.00[ASN][1000 genomes]
rs6590880	0.85[ASN][1000 genomes]
rs6590881	0.85[ASN][1000 genomes]
rs6590882	0.85[ASN][1000 genomes]
rs6590893	0.85[EUR][1000 genomes]
rs6590894	0.82[EUR][1000 genomes]
rs7107018	0.86[EUR][1000 genomes]
rs7107512	0.87[EUR][1000 genomes]
rs7112189	0.84[EUR][1000 genomes]
rs7112255	0.85[ASN][1000 genomes]
rs7112388	1.00[ASN][1000 genomes]
rs7116889	0.87[EUR][1000 genomes]
rs7119712	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7119886	0.81[EUR][1000 genomes]
rs7125321	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7126770	0.85[EUR][1000 genomes]
rs7935364	0.92[ASN][1000 genomes]
rs7938237	1.00[ASN][1000 genomes]
rs7951375	1.00[ASN][1000 genomes]
rs947992	0.94[EUR][1000 genomes]
rs9988861	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv556133	chr11:101398450-101433161	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv556134	chr11:101398450-101436689	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv556135	chr11:101399510-101436689	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv519281	chr11:101404645-101436689	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv468852	chr11:101404645-101436689	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv556136	chr11:101404645-101436689	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv556137	chr11:101405218-101436689	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv2761703	chr11:101406049-101439667	Enhancers Flanking Active TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv556138	chr11:101409478-101436997	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
13	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv3333275	chr11:101418242-101420240	Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3399049	chr11:101418642-101419790	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101401200-101425800	Weak transcription	Ovary	ovary
2	chr11:101416400-101437400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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