Variant report

Variant	rs7112388
Chromosome Location	chr11:101411119-101411120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10791501	0.85[ASN][1000 genomes]
rs10791502	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10895144	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12799086	0.89[EUR][1000 genomes]
rs4457714	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4469859	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs56743893	1.00[ASN][1000 genomes]
rs57222897	1.00[ASN][1000 genomes]
rs58541860	0.89[EUR][1000 genomes]
rs58720814	0.92[ASN][1000 genomes]
rs59163187	1.00[EUR][1000 genomes]
rs60428691	1.00[EUR][1000 genomes]
rs61700184	1.00[ASN][1000 genomes]
rs6590880	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6590881	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6590882	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7110783	1.00[EUR][1000 genomes]
rs7112255	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7112841	1.00[EUR][1000 genomes]
rs7115437	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7115586	1.00[EUR][1000 genomes]
rs7116242	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7125321	0.92[ASN][1000 genomes]
rs73575719	0.89[EUR][1000 genomes]
rs73575778	1.00[EUR][1000 genomes]
rs73575787	1.00[EUR][1000 genomes]
rs73575794	1.00[EUR][1000 genomes]
rs73577607	1.00[EUR][1000 genomes]
rs73580377	1.00[EUR][1000 genomes]
rs73580380	1.00[EUR][1000 genomes]
rs73580383	1.00[EUR][1000 genomes]
rs73580393	1.00[EUR][1000 genomes]
rs73580395	1.00[EUR][1000 genomes]
rs73580398	1.00[EUR][1000 genomes]
rs73582398	1.00[EUR][1000 genomes]
rs73584303	1.00[EUR][1000 genomes]
rs73584386	1.00[EUR][1000 genomes]
rs73584454	1.00[EUR][1000 genomes]
rs73584455	1.00[EUR][1000 genomes]
rs73584460	1.00[EUR][1000 genomes]
rs73584466	1.00[EUR][1000 genomes]
rs73584476	1.00[EUR][1000 genomes]
rs73584483	1.00[EUR][1000 genomes]
rs73584487	1.00[EUR][1000 genomes]
rs73584499	1.00[EUR][1000 genomes]
rs7935364	0.92[ASN][1000 genomes]
rs7935407	1.00[EUR][1000 genomes]
rs7938237	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7942189	1.00[ASN][1000 genomes]
rs7951375	1.00[ASN][1000 genomes]
rs9988861	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv556133	chr11:101398450-101433161	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv556134	chr11:101398450-101436689	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv556135	chr11:101399510-101436689	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv519281	chr11:101404645-101436689	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv468852	chr11:101404645-101436689	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv556136	chr11:101404645-101436689	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv556137	chr11:101405218-101436689	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv2761703	chr11:101406049-101439667	Enhancers Flanking Active TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv556138	chr11:101409478-101436997	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
13	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101401200-101425800	Weak transcription	Ovary	ovary

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