Variant report

Variant	rs73580393
Chromosome Location	chr11:101458699-101458700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12799086	0.89[EUR][1000 genomes]
rs56697625	0.90[AMR][1000 genomes]
rs58541860	0.89[EUR][1000 genomes]
rs59163187	1.00[EUR][1000 genomes]
rs60428691	1.00[EUR][1000 genomes]
rs7110783	1.00[EUR][1000 genomes]
rs7112388	1.00[EUR][1000 genomes]
rs7112841	1.00[EUR][1000 genomes]
rs7115437	1.00[EUR][1000 genomes]
rs7115586	1.00[EUR][1000 genomes]
rs7116242	1.00[EUR][1000 genomes]
rs73575719	0.89[EUR][1000 genomes]
rs73575778	1.00[EUR][1000 genomes]
rs73575787	1.00[EUR][1000 genomes]
rs73575794	1.00[EUR][1000 genomes]
rs73577607	1.00[EUR][1000 genomes]
rs73580377	1.00[EUR][1000 genomes]
rs73580380	1.00[EUR][1000 genomes]
rs73580383	1.00[EUR][1000 genomes]
rs73580395	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580398	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582398	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73584303	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73584386	1.00[EUR][1000 genomes]
rs73584454	1.00[EUR][1000 genomes]
rs73584455	1.00[EUR][1000 genomes]
rs73584460	1.00[EUR][1000 genomes]
rs73584466	1.00[EUR][1000 genomes]
rs73584476	1.00[EUR][1000 genomes]
rs73584483	1.00[EUR][1000 genomes]
rs73584487	1.00[EUR][1000 genomes]
rs73584499	1.00[EUR][1000 genomes]
rs7935407	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv898331	chr11:101436689-101492630	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101454800-101462200	Weak transcription	Pancreas	Pancrea
2	chr11:101458000-101462200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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