Variant report

Variant	rs60428691
Chromosome Location	chr11:101442171-101442172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12799086	0.89[EUR][1000 genomes]
rs58541860	0.89[EUR][1000 genomes]
rs59163187	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7110783	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7112388	1.00[EUR][1000 genomes]
rs7112841	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7115437	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7115586	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7116242	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73575719	0.89[EUR][1000 genomes]
rs73575778	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73575787	1.00[EUR][1000 genomes]
rs73575794	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73577607	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580383	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73580393	1.00[EUR][1000 genomes]
rs73580395	1.00[EUR][1000 genomes]
rs73580398	1.00[EUR][1000 genomes]
rs73582398	1.00[EUR][1000 genomes]
rs73584303	1.00[EUR][1000 genomes]
rs73584386	1.00[EUR][1000 genomes]
rs73584454	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73584455	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73584460	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73584466	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73584476	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73584483	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73584487	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73584499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7935407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv898331	chr11:101436689-101492630	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101426400-101447600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:101437000-101444400	Weak transcription	NHDF-Ad	bronchial
3	chr11:101438400-101443400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:101438400-101445400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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