Variant report

Variant	rs73584386
Chromosome Location	chr11:101505236-101505237
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12799086	0.89[EUR][1000 genomes]
rs56697625	0.89[AMR][1000 genomes]
rs58541860	0.89[EUR][1000 genomes]
rs59163187	1.00[EUR][1000 genomes]
rs60428691	1.00[EUR][1000 genomes]
rs7110783	1.00[EUR][1000 genomes]
rs7112388	1.00[EUR][1000 genomes]
rs7112841	1.00[EUR][1000 genomes]
rs7115437	1.00[EUR][1000 genomes]
rs7115586	1.00[EUR][1000 genomes]
rs7116242	1.00[EUR][1000 genomes]
rs73575719	0.89[EUR][1000 genomes]
rs73575778	1.00[EUR][1000 genomes]
rs73575787	1.00[EUR][1000 genomes]
rs73575794	1.00[EUR][1000 genomes]
rs73577607	1.00[EUR][1000 genomes]
rs73580377	1.00[EUR][1000 genomes]
rs73580380	1.00[EUR][1000 genomes]
rs73580383	1.00[EUR][1000 genomes]
rs73580393	1.00[EUR][1000 genomes]
rs73580395	1.00[EUR][1000 genomes]
rs73580398	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73582398	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73584303	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73584454	1.00[EUR][1000 genomes]
rs73584455	1.00[EUR][1000 genomes]
rs73584460	1.00[EUR][1000 genomes]
rs73584466	1.00[EUR][1000 genomes]
rs73584476	1.00[EUR][1000 genomes]
rs73584483	1.00[EUR][1000 genomes]
rs73584487	1.00[EUR][1000 genomes]
rs73584499	1.00[EUR][1000 genomes]
rs7935407	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101503600-101506200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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