Variant report

Variant	rs10896067
Chromosome Location	chr11:65704096-65704097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65702981..65706998-chr11:65711447..65715062,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175513	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10791842	1.00[AMR][1000 genomes]
rs10896066	1.00[AMR][1000 genomes]
rs10896068	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12360624	1.00[AMR][1000 genomes]
rs17147376	1.00[AMR][1000 genomes]
rs7940585	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs7951094	1.00[AMR][1000 genomes]
rs879509	1.00[AMR][1000 genomes]
rs9326358	1.00[AMR][1000 genomes]
rs9326364	1.00[YRI][hapmap]
rs9666272	1.00[AMR][1000 genomes]
rs9667266	1.00[AMR][1000 genomes]
rs9667817	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9734332	1.00[AMR][1000 genomes]
rs9795173	1.00[AMR][1000 genomes]
rs9795318	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
2	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
3	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
6	nsv897762	chr11:65613218-65758854	Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	185 gene(s)	inside rSNPs	diseases
7	nsv897765	chr11:65623708-65758854	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
8	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
9	esv3444925	chr11:65687425-65714023	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65688800-65715000	Weak transcription	Right Atrium	heart
2	chr11:65690600-65705000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:65691200-65708600	Weak transcription	HSMM	muscle
4	chr11:65694000-65708200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:65695800-65705000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:65696600-65705000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:65699800-65708600	Weak transcription	GM12878-XiMat	blood
8	chr11:65699800-65712600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:65700000-65705000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:65700000-65705000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:65700000-65712600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:65700200-65705800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:65700400-65707800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:65700400-65708600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:65700600-65705000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:65700600-65705000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:65700800-65705000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:65702000-65708000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:65702600-65705000	Weak transcription	K562	blood
20	chr11:65702600-65708200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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