Variant report

Variant	rs10791842
Chromosome Location	chr11:65817702-65817703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65816864..65823380-chr11:65832037..65840391,16	MCF-7	breast:
2	chr11:65812475..65816551-chr11:65816982..65820716,11	MCF-7	breast:
3	chr11:65768250..65771590-chr11:65817294..65821421,6	K562	blood:
4	chr11:65811021..65815121-chr11:65816503..65821449,7	K562	blood:
5	chr11:65429132..65431872-chr11:65817636..65822281,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175229	Chromatin interaction
ENSG00000175376	Chromatin interaction
ENSG00000087365	Chromatin interaction
ENSG00000255038	Chromatin interaction
ENSG00000175334	Chromatin interaction
ENSG00000175115	Chromatin interaction
ENSG00000173039	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10896066	1.00[AMR][1000 genomes]
rs10896067	1.00[AMR][1000 genomes]
rs10896068	1.00[AMR][1000 genomes]
rs12360624	1.00[AMR][1000 genomes]
rs17147376	1.00[AMR][1000 genomes]
rs524268	1.00[AMR][1000 genomes]
rs7940585	1.00[AMR][1000 genomes]
rs7951094	1.00[AMR][1000 genomes]
rs879509	1.00[AMR][1000 genomes]
rs9326358	1.00[AMR][1000 genomes]
rs9326367	0.82[AFR][1000 genomes]
rs9666272	1.00[AMR][1000 genomes]
rs9667266	1.00[AMR][1000 genomes]
rs9667817	1.00[AMR][1000 genomes]
rs9667922	0.84[AFR][1000 genomes]
rs9734332	1.00[AMR][1000 genomes]
rs9795173	1.00[AMR][1000 genomes]
rs9795318	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	nsv897768	chr11:65715210-65842064	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
3	nsv897769	chr11:65727799-65828625	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
4	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
5	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
7	nsv897770	chr11:65803750-65824472	Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65790400-65818600	Weak transcription	HSMM	muscle
2	chr11:65813000-65818200	Weak transcription	Lung	lung
3	chr11:65813200-65818200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:65813200-65818200	Weak transcription	Spleen	Spleen
5	chr11:65813200-65818400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:65813200-65818800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr11:65813400-65818200	Weak transcription	A549	lung
8	chr11:65813600-65818200	Weak transcription	Dnd41	blood
9	chr11:65814200-65819200	Enhancers	Pancreas	Pancrea
10	chr11:65814400-65818800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr11:65815800-65818200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr11:65815800-65818400	Weak transcription	Fetal Kidney	kidney
13	chr11:65816400-65818400	Weak transcription	Right Ventricle	heart
14	chr11:65816600-65818200	Weak transcription	HMEC	breast
15	chr11:65816600-65818400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:65816600-65818400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:65816600-65818600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:65816600-65818600	Weak transcription	Brain Substantia Nigra	brain
19	chr11:65816600-65818600	Weak transcription	Left Ventricle	heart
20	chr11:65816600-65818800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr11:65816800-65818400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:65816800-65818400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr11:65816800-65818600	Weak transcription	Gastric	stomach
24	chr11:65817000-65818200	Weak transcription	Right Atrium	heart
25	chr11:65817000-65818600	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr11:65817000-65818800	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr11:65817000-65819000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:65817000-65819000	Weak transcription	Primary T cells from cord blood	blood
29	chr11:65817000-65819000	Enhancers	Fetal Thymus	thymus
30	chr11:65817200-65818200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:65817200-65818200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr11:65817200-65818200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:65817200-65818200	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr11:65817200-65818200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr11:65817200-65818200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr11:65817200-65818200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:65817200-65818200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:65817200-65818200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:65817200-65818200	Weak transcription	Brain Germinal Matrix	brain
40	chr11:65817200-65818200	Weak transcription	GM12878-XiMat	blood
41	chr11:65817200-65818400	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr11:65817200-65818400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr11:65817200-65818400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:65817200-65818400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:65817200-65818400	Weak transcription	Brain Angular Gyrus	brain
46	chr11:65817200-65818400	Weak transcription	Brain Anterior Caudate	brain
47	chr11:65817200-65818400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr11:65817200-65818400	Weak transcription	Fetal Brain Male	brain
49	chr11:65817200-65818400	Weak transcription	Fetal Heart	heart
50	chr11:65817200-65818400	Enhancers	Hela-S3	cervix

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