Variant report

Variant	rs9734332
Chromosome Location	chr11:65700027-65700028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65685795..65689650-chr11:65696551..65700484,6	MCF-7	breast:
2	chr11:65699308..65702229-chr11:65725345..65726917,2	MCF-7	breast:
3	chr11:65657110..65659660-chr11:65699000..65702275,4	MCF-7	breast:
4	chr11:65656237..65656923-chr11:65699586..65700172,2	K562	blood:
5	chr11:65687555..65689497-chr11:65697887..65700261,3	MCF-7	breast:
6	chr11:65654434..65656570-chr11:65699058..65700716,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175550	Chromatin interaction
ENSG00000175573	Chromatin interaction
ENSG00000175602	Chromatin interaction
ENSG00000172500	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10791842	1.00[AMR][1000 genomes]
rs10896066	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10896067	1.00[AMR][1000 genomes]
rs10896068	1.00[AMR][1000 genomes]
rs12360624	1.00[AMR][1000 genomes]
rs17147376	1.00[AMR][1000 genomes]
rs7940585	1.00[AMR][1000 genomes]
rs7951094	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs879509	1.00[AMR][1000 genomes]
rs9326358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9666272	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9667266	1.00[AMR][1000 genomes]
rs9667817	1.00[AMR][1000 genomes]
rs9795173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9795318	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
2	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
3	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
6	nsv897762	chr11:65613218-65758854	Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	185 gene(s)	inside rSNPs	diseases
7	nsv897765	chr11:65623708-65758854	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
8	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
9	esv3444925	chr11:65687425-65714023	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65688800-65715000	Weak transcription	Right Atrium	heart
2	chr11:65690400-65702000	Weak transcription	Fetal Brain Male	brain
3	chr11:65690600-65705000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:65690800-65701000	Weak transcription	Esophagus	oesophagus
5	chr11:65691200-65708600	Weak transcription	HSMM	muscle
6	chr11:65692600-65701600	Weak transcription	NHLF	lung
7	chr11:65692800-65700200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:65693600-65701600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:65694000-65708200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:65695800-65705000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:65696600-65705000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:65696800-65700800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:65698600-65700400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr11:65698800-65700200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr11:65698800-65700200	Enhancers	Fetal Thymus	thymus
16	chr11:65698800-65700800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:65699000-65700400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:65699000-65700400	Enhancers	Primary T cells fromperipheralblood	blood
19	chr11:65699000-65700600	Enhancers	HepG2	liver
20	chr11:65699000-65702600	Enhancers	K562	blood
21	chr11:65699400-65700200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:65699400-65700200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:65699400-65700400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr11:65699400-65700400	Enhancers	Fetal Muscle Trunk	muscle
25	chr11:65699400-65700600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:65699400-65701000	Enhancers	Placenta	Placenta
27	chr11:65699600-65700200	Enhancers	A549	lung
28	chr11:65699600-65700600	Enhancers	H1 Cell Line	embryonic stem cell
29	chr11:65699800-65700200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr11:65699800-65700200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr11:65699800-65700200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr11:65699800-65700200	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr11:65699800-65700200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr11:65699800-65700200	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr11:65699800-65700400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:65699800-65700600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:65699800-65700800	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr11:65699800-65703600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr11:65699800-65708600	Weak transcription	GM12878-XiMat	blood
40	chr11:65699800-65712600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr11:65700000-65700200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr11:65700000-65700200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:65700000-65700200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:65700000-65700200	Enhancers	Osteobl	bone
45	chr11:65700000-65700400	Active TSS	iPS-15b Cell Line	embryonic stem cell
46	chr11:65700000-65700400	Enhancers	Brain Anterior Caudate	brain
47	chr11:65700000-65700400	Weak transcription	Fetal Lung	lung
48	chr11:65700000-65705000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr11:65700000-65705000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:65700000-65712600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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