Variant report

Variant	rs9667817
Chromosome Location	chr11:65780702-65780703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65624802..65627661-chr11:65779805..65782359,2	MCF-7	breast:
2	chr11:65778738..65782540-chr11:65791690..65794306,3	MCF-7	breast:
3	chr11:65780273..65782876-chr11:65822009..65824161,2	K562	blood:
4	chr11:65684023..65687163-chr11:65778751..65782457,4	MCF-7	breast:
5	chr11:65624293..65627593-chr11:65778197..65781174,3	MCF-7	breast:
6	chr11:65780649..65783922-chr11:65810860..65813653,4	MCF-7	breast:
7	chr11:65780378..65783041-chr11:65792155..65793993,2	MCF-7	breast:
8	chr11:65188418..65191702-chr11:65777424..65780862,3	MCF-7	breast:
9	chr11:65778958..65780961-chr11:65818944..65820828,4	MCF-7	breast:
10	chr11:65650838..65654244-chr11:65778689..65782514,4	MCF-7	breast:
11	chr11:65779081..65782393-chr11:65836476..65839425,3	MCF-7	breast:
12	chr11:65655400..65657605-chr11:65778805..65780715,2	MCF-7	breast:
13	chr11:65654636..65658395-chr11:65779993..65782935,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000175229	Chromatin interaction
ENSG00000255038	Chromatin interaction
ENSG00000175115	Chromatin interaction
ENSG00000172500	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000238752	Chromatin interaction
ENSG00000175550	Chromatin interaction
ENSG00000172732	Chromatin interaction
ENSG00000175602	Chromatin interaction
ENSG00000245532	Chromatin interaction
ENSG00000175294	Chromatin interaction
ENSG00000087365	Chromatin interaction
ENSG00000175573	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10791842	1.00[AMR][1000 genomes]
rs10896066	1.00[AMR][1000 genomes]
rs10896067	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10896068	1.00[AMR][1000 genomes]
rs12360624	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17147376	1.00[AMR][1000 genomes]
rs524268	1.00[AMR][1000 genomes]
rs7940585	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs7951094	1.00[AMR][1000 genomes]
rs879509	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9326358	1.00[AMR][1000 genomes]
rs9326364	1.00[YRI][hapmap]
rs9666272	1.00[AMR][1000 genomes]
rs9667266	1.00[AMR][1000 genomes]
rs9734332	1.00[AMR][1000 genomes]
rs9795173	1.00[AMR][1000 genomes]
rs9795318	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
2	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
4	nsv897768	chr11:65715210-65842064	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
5	nsv897769	chr11:65727799-65828625	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
6	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65776800-65781400	Weak transcription	HSMMtube	muscle
2	chr11:65778000-65781000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr11:65778200-65781000	Enhancers	HMEC	breast
4	chr11:65778200-65781600	Enhancers	Placenta	Placenta
5	chr11:65778800-65781200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:65778800-65781200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:65779000-65781000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr11:65779000-65781200	Bivalent Enhancer	Fetal Thymus	thymus
9	chr11:65779200-65782400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:65779400-65781000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr11:65779600-65780800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
12	chr11:65779600-65782600	Weak transcription	Lung	lung
13	chr11:65779800-65780800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:65779800-65781000	Enhancers	Right Ventricle	heart
15	chr11:65779800-65781600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:65779800-65782600	Weak transcription	Right Atrium	heart
17	chr11:65779800-65783200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:65780000-65780800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:65780000-65781000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:65780200-65780800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
21	chr11:65780200-65780800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:65780200-65780800	Enhancers	Aorta	Aorta
23	chr11:65780200-65780800	Enhancers	HUVEC	blood vessel
24	chr11:65780200-65781000	Enhancers	Osteobl	bone
25	chr11:65780200-65781600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr11:65780400-65780800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:65780400-65780800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:65780400-65780800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:65780400-65780800	Flanking Active TSS	Esophagus	oesophagus
30	chr11:65780400-65780800	Genic enhancers	Spleen	Spleen
31	chr11:65780400-65780800	Enhancers	NHEK	skin
32	chr11:65780400-65781000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:65780400-65781000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:65780400-65781200	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr11:65780400-65781200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
36	chr11:65780400-65781200	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr11:65780400-65781400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:65780400-65782600	Enhancers	HSMM	muscle
39	chr11:65780600-65780800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:65780600-65780800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
41	chr11:65780600-65780800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:65780600-65780800	Bivalent Enhancer	Liver	Liver
43	chr11:65780600-65780800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
44	chr11:65780600-65780800	Bivalent Enhancer	Fetal Intestine Small	intestine
45	chr11:65780600-65780800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
46	chr11:65780600-65780800	Enhancers	Hela-S3	cervix
47	chr11:65780600-65781000	Bivalent Enhancer	Primary B cells from cord blood	blood
48	chr11:65780600-65781000	Enhancers	A549	lung
49	chr11:65780600-65781000	Bivalent Enhancer	HepG2	liver
50	chr11:65780600-65781200	Flanking Active TSS	K562	blood

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