Variant report

Variant	rs9326367
Chromosome Location	chr11:65815800-65815801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr11:65814890-65815843	ECC-1	luminal epithelium:	n/a	n/a
2	ESR1	chr11:65815107-65815904	ECC-1	luminal epithelium:	n/a	n/a
3	TCF12	chr11:65814813-65815844	ECC-1	luminal epithelium:	n/a	n/a
4	EP300	chr11:65814888-65815822	ECC-1	luminal epithelium:	n/a	n/a
5	ESR1	chr11:65815168-65815841	ECC-1	luminal epithelium:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65815755..65817643-chr11:65824543..65827517,2	MCF-7	breast:
2	chr11:65812475..65816551-chr11:65816982..65820716,11	MCF-7	breast:
3	chr11:65768713..65771187-chr11:65815106..65817250,2	MCF-7	breast:
4	chr11:65792176..65796965-chr11:65812595..65817477,5	MCF-7	breast:
5	chr11:65815354..65817680-chr11:65821630..65823726,2	K562	blood:
6	chr11:65775333..65777143-chr11:65814393..65815931,2	K562	blood:
7	chr11:65809951..65813580-chr11:65814012..65816318,3	K562	blood:
8	chr11:65625460..65627903-chr11:65814172..65815840,2	K562	blood:

No data

Variant related genes	Relation type
SF3B2	TF binding region
GAL3ST3	TF binding region
ENSG00000238752	TF binding region
ENSG00000172757	Chromatin interaction
ENSG00000175229	Chromatin interaction
ENSG00000175376	Chromatin interaction
ENSG00000238752	Chromatin interaction
ENSG00000175294	Chromatin interaction
ENSG00000175334	Chromatin interaction
ENSG00000172732	Chromatin interaction
ENSG00000087365	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10750773	1.00[AMR][1000 genomes]
rs10750776	0.83[AMR][1000 genomes]
rs10791842	0.82[AFR][1000 genomes]
rs10791844	0.83[AMR][1000 genomes]
rs11227418	0.83[AMR][1000 genomes]
rs11227421	0.83[AMR][1000 genomes]
rs11227422	0.83[AMR][1000 genomes]
rs11822080	0.83[AMR][1000 genomes]
rs12290898	0.83[AMR][1000 genomes]
rs13328870	0.83[AMR][1000 genomes]
rs1627404	0.83[AMR][1000 genomes]
rs17147342	0.83[AMR][1000 genomes]
rs34725821	0.83[AMR][1000 genomes]
rs495684	0.83[AMR][1000 genomes]
rs501690	0.83[AMR][1000 genomes]
rs501979	0.83[AMR][1000 genomes]
rs548858	1.00[AMR][1000 genomes]
rs558480	1.00[AMR][1000 genomes]
rs561948	0.83[AMR][1000 genomes]
rs6591204	0.83[AMR][1000 genomes]
rs7131001	1.00[AMR][1000 genomes]
rs7928507	0.83[AMR][1000 genomes]
rs7937763	1.00[AMR][1000 genomes]
rs7941487	0.83[AMR][1000 genomes]
rs9285797	0.83[AMR][1000 genomes]
rs9326366	1.00[AMR][1000 genomes]
rs9326368	0.83[AMR][1000 genomes]
rs9326369	0.83[AMR][1000 genomes]
rs9667583	1.00[AMR][1000 genomes]
rs9667922	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9704166	0.83[AMR][1000 genomes]
rs9737415	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	nsv897768	chr11:65715210-65842064	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
3	nsv897769	chr11:65727799-65828625	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
4	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
5	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
7	nsv897770	chr11:65803750-65824472	Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65790400-65818600	Weak transcription	HSMM	muscle
2	chr11:65805000-65815800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:65809800-65815800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:65812800-65816200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr11:65813000-65816200	Weak transcription	Brain Substantia Nigra	brain
6	chr11:65813000-65816600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:65813000-65818200	Weak transcription	Lung	lung
8	chr11:65813200-65815800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:65813200-65816000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:65813200-65816200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:65813200-65816200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr11:65813200-65817200	Weak transcription	Hela-S3	cervix
13	chr11:65813200-65818200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:65813200-65818200	Weak transcription	Spleen	Spleen
15	chr11:65813200-65818400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr11:65813200-65818800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr11:65813400-65816200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:65813400-65816800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr11:65813400-65817600	Weak transcription	K562	blood
20	chr11:65813400-65818200	Weak transcription	A549	lung
21	chr11:65813600-65818200	Weak transcription	Dnd41	blood
22	chr11:65814000-65816200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:65814200-65819200	Enhancers	Pancreas	Pancrea
24	chr11:65814400-65818800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr11:65814800-65816600	Enhancers	Left Ventricle	heart
26	chr11:65815000-65815800	Bivalent Enhancer	Fetal Muscle Leg	muscle
27	chr11:65815000-65816000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
28	chr11:65815000-65816200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
29	chr11:65815000-65817200	Enhancers	Fetal Brain Male	brain
30	chr11:65815000-65817200	Enhancers	Fetal Heart	heart
31	chr11:65815200-65815800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:65815200-65815800	Enhancers	Muscle Satellite Cultured Cells	--
33	chr11:65815200-65815800	Weak transcription	Right Atrium	heart
34	chr11:65815200-65816000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
35	chr11:65815200-65816200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:65815200-65816400	Enhancers	Right Ventricle	heart
37	chr11:65815400-65815800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:65815400-65815800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr11:65815400-65815800	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr11:65815400-65815800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:65815400-65815800	Bivalent Enhancer	Brain Cingulate Gyrus	brain
42	chr11:65815400-65816000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
43	chr11:65815400-65816000	Flanking Active TSS	Fetal Brain Female	brain
44	chr11:65815400-65816200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
45	chr11:65815400-65816200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr11:65815400-65816400	Enhancers	Fetal Thymus	thymus
47	chr11:65815400-65817000	Active TSS	Brain Inferior Temporal Lobe	brain
48	chr11:65815400-65817200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:65815600-65815800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:65815600-65815800	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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