Variant report

Variant	rs7937763
Chromosome Location	chr11:65870774-65870775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65868161..65870235-chr11:65870473..65872382,2	K562	blood:
2	chr11:65869303..65872952-chr11:65875129..65877577,3	K562	blood:
3	chr11:65870328..65872289-chr11:65878873..65881229,2	K562	blood:
4	chr11:65865047..65867360-chr11:65869735..65871685,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175115	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10750773	1.00[AMR][1000 genomes]
rs10750776	0.83[AMR][1000 genomes]
rs10791844	0.83[AMR][1000 genomes]
rs11227418	0.83[AMR][1000 genomes]
rs11227421	0.83[AMR][1000 genomes]
rs11227422	0.83[AMR][1000 genomes]
rs11822080	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12290898	0.83[AMR][1000 genomes]
rs13328870	0.83[AMR][1000 genomes]
rs1627404	0.83[AMR][1000 genomes]
rs17147342	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34725821	0.83[AMR][1000 genomes]
rs495684	0.83[AMR][1000 genomes]
rs501690	0.83[AMR][1000 genomes]
rs501979	0.83[AMR][1000 genomes]
rs548858	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs558480	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs561948	0.83[AMR][1000 genomes]
rs6591204	0.83[AMR][1000 genomes]
rs7131001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7928507	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7941487	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9285797	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9326366	1.00[AMR][1000 genomes]
rs9326367	1.00[AMR][1000 genomes]
rs9326368	0.83[AMR][1000 genomes]
rs9326369	0.83[AMR][1000 genomes]
rs9667583	1.00[AMR][1000 genomes]
rs9667922	1.00[AMR][1000 genomes]
rs9704166	0.83[AMR][1000 genomes]
rs9737244	0.84[AFR][1000 genomes]
rs9737415	0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65848400-65874200	Weak transcription	Fetal Muscle Leg	muscle
2	chr11:65849200-65879600	Weak transcription	Aorta	Aorta
3	chr11:65851600-65882800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:65851800-65872000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:65851800-65878800	Weak transcription	HSMM	muscle
6	chr11:65852000-65874000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:65852200-65871600	Weak transcription	Hela-S3	cervix
8	chr11:65853400-65871600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:65859000-65873600	Weak transcription	Fetal Intestine Small	intestine
10	chr11:65863800-65880200	Weak transcription	Fetal Stomach	stomach
11	chr11:65868000-65871800	Weak transcription	NH-A	brain
12	chr11:65868200-65874200	Weak transcription	HepG2	liver
13	chr11:65868400-65871600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:65868400-65871600	Weak transcription	Gastric	stomach
15	chr11:65868400-65871600	Weak transcription	Osteobl	bone
16	chr11:65868400-65872200	Weak transcription	Brain Anterior Caudate	brain
17	chr11:65868400-65872400	Enhancers	Primary B cells from peripheral blood	blood
18	chr11:65868400-65873400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:65868400-65873600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:65868400-65873800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:65868400-65873800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:65868400-65874000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:65868400-65874200	Weak transcription	NHDF-Ad	bronchial
24	chr11:65868400-65874400	Weak transcription	Left Ventricle	heart
25	chr11:65868400-65874600	Weak transcription	Lung	lung
26	chr11:65868400-65874600	Weak transcription	Psoas Muscle	Psoas
27	chr11:65868400-65874600	Weak transcription	Right Atrium	heart
28	chr11:65868400-65874600	Weak transcription	K562	blood
29	chr11:65868400-65878400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:65868400-65879200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr11:65868400-65879200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:65868400-65879400	Weak transcription	Esophagus	oesophagus
33	chr11:65868400-65879400	Weak transcription	Ovary	ovary
34	chr11:65868400-65879600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr11:65868400-65879600	Weak transcription	Fetal Brain Female	brain
36	chr11:65868400-65879600	Weak transcription	Stomach Smooth Muscle	stomach
37	chr11:65868600-65871600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr11:65868600-65872000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr11:65868600-65879200	Weak transcription	Pancreas	Pancrea
40	chr11:65868600-65879400	Weak transcription	Small Intestine	intestine
41	chr11:65868600-65879600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:65868600-65879600	Weak transcription	Colon Smooth Muscle	Colon
43	chr11:65868600-65893800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:65868800-65874000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:65868800-65874200	Weak transcription	NHEK	skin
46	chr11:65868800-65886200	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr11:65869000-65871200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr11:65869000-65871600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr11:65869000-65873400	Enhancers	Primary T cells fromperipheralblood	blood
50	chr11:65869000-65878000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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