Variant report

Variant	rs9737415
Chromosome Location	chr11:65842064-65842065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65842058..65844229-chr11:65885606..65887262,2	MCF-7	breast:
2	chr11:65837300..65840343-chr11:65840812..65845835,6	K562	blood:
3	chr11:65818921..65820486-chr11:65841745..65844587,2	K562	blood:
4	chr11:65840513..65843599-chr11:65845942..65848991,3	K562	blood:

Variant related genes	Relation type
ENSG00000175115	Chromatin interaction
ENSG00000087365	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10750773	0.83[AMR][1000 genomes]
rs11227418	0.89[ASW][hapmap];0.80[LWK][hapmap]
rs11822080	0.82[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17147342	1.00[ASW][hapmap];0.85[LWK][hapmap];0.85[MKK][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3814747	0.81[ASW][hapmap]
rs495684	0.89[ASW][hapmap];0.80[LWK][hapmap]
rs501690	0.89[ASW][hapmap];0.80[LWK][hapmap]
rs501979	0.89[ASW][hapmap];0.80[LWK][hapmap]
rs548858	1.00[ASW][hapmap];0.81[LWK][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs558480	0.89[ASW][hapmap];0.81[LWK][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs561948	0.89[ASW][hapmap];0.80[LWK][hapmap]
rs6591204	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7131001	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7928507	0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7937692	0.89[ASW][hapmap]
rs7937763	0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7941487	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9285797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9326366	0.83[AMR][1000 genomes]
rs9326367	0.83[AMR][1000 genomes]
rs9667583	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9667922	0.83[AMR][1000 genomes]
rs9704166	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9737244	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	nsv897768	chr11:65715210-65842064	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
3	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
4	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65839000-65849800	Weak transcription	Psoas Muscle	Psoas
2	chr11:65839200-65842200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:65839200-65843800	Weak transcription	Esophagus	oesophagus
4	chr11:65839200-65843800	Weak transcription	Pancreas	Pancrea
5	chr11:65839200-65844200	Weak transcription	Aorta	Aorta
6	chr11:65839200-65846800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:65839200-65847600	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:65839200-65847800	Weak transcription	Colonic Mucosa	Colon
9	chr11:65839400-65847200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:65839400-65847200	Weak transcription	Right Atrium	heart
11	chr11:65839400-65847600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:65839400-65847600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr11:65839400-65847600	Weak transcription	Small Intestine	intestine
14	chr11:65839400-65847800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:65839400-65848800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:65839400-65850400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:65839400-65850400	Weak transcription	Fetal Intestine Large	intestine
18	chr11:65839400-65850800	Weak transcription	Liver	Liver
19	chr11:65839400-65850800	Weak transcription	Fetal Kidney	kidney
20	chr11:65839400-65850800	Weak transcription	Right Ventricle	heart
21	chr11:65839600-65844000	Weak transcription	HMEC	breast
22	chr11:65839600-65850400	Weak transcription	Brain Substantia Nigra	brain
23	chr11:65839600-65854600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:65839800-65845200	Strong transcription	Fetal Muscle Trunk	muscle
25	chr11:65840000-65842200	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr11:65840000-65843600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr11:65840000-65844200	Weak transcription	NHDF-Ad	bronchial
28	chr11:65840000-65844800	Strong transcription	Stomach Smooth Muscle	stomach
29	chr11:65840000-65846600	Strong transcription	Fetal Muscle Leg	muscle
30	chr11:65840000-65847400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr11:65840000-65847600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:65840000-65847600	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:65840200-65842200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:65840200-65842200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:65840200-65842200	Strong transcription	HSMM	muscle
36	chr11:65840200-65842400	Strong transcription	NHEK	skin
37	chr11:65840200-65843200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr11:65840200-65844000	Weak transcription	Thymus	Thymus
39	chr11:65840200-65844200	Weak transcription	NHLF	lung
40	chr11:65840200-65846200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
41	chr11:65840200-65848000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr11:65840200-65848200	Strong transcription	Fetal Stomach	stomach
43	chr11:65840400-65842200	Strong transcription	Brain Anterior Caudate	brain
44	chr11:65840400-65842200	Strong transcription	NH-A	brain
45	chr11:65840400-65842400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:65840400-65842800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:65840400-65842800	Strong transcription	Left Ventricle	heart
48	chr11:65840400-65843000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:65840400-65843200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr11:65840400-65844000	Weak transcription	Gastric	stomach

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