Variant report

Variant	rs9667583
Chromosome Location	chr11:65840597-65840598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65840242..65841877-chr11:65893961..65895607,2	MCF-7	breast:
2	chr11:65837799..65839374-chr11:65839439..65841570,2	MCF-7	breast:
3	chr11:65840513..65843599-chr11:65845942..65848991,3	K562	blood:
4	chr11:65839190..65841660-chr11:65977914..65980146,2	K562	blood:

Variant related genes	Relation type
ENSG00000175115	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10750773	1.00[AMR][1000 genomes]
rs10750776	0.83[AMR][1000 genomes]
rs10791844	0.83[AMR][1000 genomes]
rs11227418	0.83[AMR][1000 genomes]
rs11227421	0.83[AMR][1000 genomes]
rs11227422	0.83[AMR][1000 genomes]
rs11822080	0.83[AMR][1000 genomes]
rs12290898	0.83[AMR][1000 genomes]
rs13328870	0.83[AMR][1000 genomes]
rs1627404	0.83[AMR][1000 genomes]
rs17147342	0.83[AMR][1000 genomes]
rs34725821	0.83[AMR][1000 genomes]
rs495684	0.83[AMR][1000 genomes]
rs501690	0.83[AMR][1000 genomes]
rs501979	0.83[AMR][1000 genomes]
rs548858	1.00[AMR][1000 genomes]
rs558480	1.00[AMR][1000 genomes]
rs561948	0.83[AMR][1000 genomes]
rs6591204	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7131001	1.00[AMR][1000 genomes]
rs7928507	0.83[AMR][1000 genomes]
rs7937763	1.00[AMR][1000 genomes]
rs7941487	0.83[AMR][1000 genomes]
rs9285797	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9326366	1.00[AMR][1000 genomes]
rs9326367	1.00[AMR][1000 genomes]
rs9326368	0.83[AMR][1000 genomes]
rs9326369	0.83[AMR][1000 genomes]
rs9667922	1.00[AMR][1000 genomes]
rs9704166	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9737244	0.92[AFR][1000 genomes]
rs9737415	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	nsv897768	chr11:65715210-65842064	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
3	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
4	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65838000-65840600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:65838400-65841000	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
3	chr11:65839000-65841400	Weak transcription	Ovary	ovary
4	chr11:65839000-65849800	Weak transcription	Psoas Muscle	Psoas
5	chr11:65839200-65840800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:65839200-65842200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:65839200-65843800	Weak transcription	Esophagus	oesophagus
8	chr11:65839200-65843800	Weak transcription	Pancreas	Pancrea
9	chr11:65839200-65844200	Weak transcription	Aorta	Aorta
10	chr11:65839200-65846800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:65839200-65847600	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:65839200-65847800	Weak transcription	Colonic Mucosa	Colon
13	chr11:65839400-65840600	Enhancers	K562	blood
14	chr11:65839400-65841400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:65839400-65841400	Weak transcription	Placenta	Placenta
16	chr11:65839400-65847200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr11:65839400-65847200	Weak transcription	Right Atrium	heart
18	chr11:65839400-65847600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:65839400-65847600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:65839400-65847600	Weak transcription	Small Intestine	intestine
21	chr11:65839400-65847800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:65839400-65848800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:65839400-65850400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:65839400-65850400	Weak transcription	Fetal Intestine Large	intestine
25	chr11:65839400-65850800	Weak transcription	Liver	Liver
26	chr11:65839400-65850800	Weak transcription	Fetal Kidney	kidney
27	chr11:65839400-65850800	Weak transcription	Right Ventricle	heart
28	chr11:65839600-65840600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr11:65839600-65840600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
30	chr11:65839600-65840800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
31	chr11:65839600-65840800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr11:65839600-65840800	Enhancers	Fetal Brain Male	brain
33	chr11:65839600-65841000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr11:65839600-65841000	Enhancers	HepG2	liver
35	chr11:65839600-65841200	Weak transcription	Fetal Intestine Small	intestine
36	chr11:65839600-65841400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:65839600-65841400	Weak transcription	HSMMtube	muscle
38	chr11:65839600-65841600	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr11:65839600-65844000	Weak transcription	HMEC	breast
40	chr11:65839600-65850400	Weak transcription	Brain Substantia Nigra	brain
41	chr11:65839600-65854600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:65839800-65840600	Enhancers	Fetal Heart	heart
43	chr11:65839800-65840600	Genic enhancers	Fetal Thymus	thymus
44	chr11:65839800-65840600	Transcr. at gene 5' and 3'	Hela-S3	cervix
45	chr11:65839800-65841000	Genic enhancers	Primary B cells from cord blood	blood
46	chr11:65839800-65841000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
47	chr11:65839800-65841800	Genic enhancers	Primary B cells from peripheral blood	blood
48	chr11:65839800-65845200	Strong transcription	Fetal Muscle Trunk	muscle
49	chr11:65840000-65840600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:65840000-65840600	Genic enhancers	Muscle Satellite Cultured Cells	--

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