Variant report

Variant	rs9326369
Chromosome Location	chr11:65832520-65832521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65816864..65823380-chr11:65832037..65840391,16	MCF-7	breast:
2	chr11:65826244..65833224-chr11:65834439..65839387,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255038	Chromatin interaction
ENSG00000087365	Chromatin interaction
ENSG00000238752	Chromatin interaction
ENSG00000175115	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10750773	0.83[AMR][1000 genomes]
rs10791844	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227418	1.00[AMR][1000 genomes]
rs11227421	1.00[AMR][1000 genomes]
rs11227422	1.00[AMR][1000 genomes]
rs12290898	1.00[AMR][1000 genomes]
rs13328870	1.00[AMR][1000 genomes]
rs1627404	1.00[AMR][1000 genomes]
rs34725821	1.00[AMR][1000 genomes]
rs495684	1.00[AMR][1000 genomes]
rs501690	1.00[AMR][1000 genomes]
rs501979	1.00[AMR][1000 genomes]
rs548858	0.83[AMR][1000 genomes]
rs558480	0.83[AMR][1000 genomes]
rs561948	1.00[AMR][1000 genomes]
rs7131001	0.83[AMR][1000 genomes]
rs7937763	0.83[AMR][1000 genomes]
rs9326366	0.83[AMR][1000 genomes]
rs9326367	0.83[AMR][1000 genomes]
rs9326368	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9667583	0.83[AMR][1000 genomes]
rs9667922	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	nsv897768	chr11:65715210-65842064	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
3	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
4	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65821000-65835600	Weak transcription	Right Atrium	heart
2	chr11:65821000-65836600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:65821000-65836600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:65821200-65835400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:65821200-65835600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:65821200-65836000	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:65821200-65836000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:65821200-65836000	Strong transcription	Fetal Intestine Large	intestine
9	chr11:65821200-65836000	Strong transcription	NHLF	lung
10	chr11:65821200-65836200	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:65821200-65836600	Strong transcription	Fetal Stomach	stomach
12	chr11:65821400-65833800	Strong transcription	Placenta	Placenta
13	chr11:65821400-65835200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:65821400-65835200	Strong transcription	Fetal Muscle Trunk	muscle
15	chr11:65821400-65835400	Strong transcription	Stomach Smooth Muscle	stomach
16	chr11:65821400-65835600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:65821400-65835600	Strong transcription	Brain Germinal Matrix	brain
18	chr11:65821400-65835800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr11:65821400-65836600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:65821600-65835400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:65821600-65835400	Strong transcription	Fetal Thymus	thymus
22	chr11:65821600-65836000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:65821800-65832800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
24	chr11:65821800-65833600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:65821800-65833800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr11:65821800-65835400	Strong transcription	Spleen	Spleen
27	chr11:65821800-65835800	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr11:65821800-65835800	Strong transcription	K562	blood
29	chr11:65821800-65836000	Strong transcription	H9 Cell Line	embryonic stem cell
30	chr11:65821800-65836000	Strong transcription	Primary T cells from cord blood	blood
31	chr11:65821800-65836600	Strong transcription	Thymus	Thymus
32	chr11:65822000-65833000	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:65822000-65833000	Strong transcription	Primary T killer memory cells from peripheral blood	blood
34	chr11:65822000-65833000	Strong transcription	Left Ventricle	heart
35	chr11:65822000-65833200	Strong transcription	Primary hematopoietic stem cells	blood
36	chr11:65822000-65833800	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr11:65822000-65833800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:65822000-65834000	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr11:65822000-65834200	Strong transcription	Brain Hippocampus Middle	brain
40	chr11:65822000-65835400	Strong transcription	Primary B cells from cord blood	blood
41	chr11:65822000-65835400	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr11:65822000-65835400	Strong transcription	Brain Substantia Nigra	brain
43	chr11:65822000-65835400	Strong transcription	Fetal Brain Female	brain
44	chr11:65822000-65835600	Strong transcription	Brain Anterior Caudate	brain
45	chr11:65822000-65835600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr11:65822000-65835600	Strong transcription	Colonic Mucosa	Colon
47	chr11:65822000-65835600	Strong transcription	Gastric	stomach
48	chr11:65822000-65835600	Strong transcription	Rectal Smooth Muscle	rectum
49	chr11:65822000-65835600	Strong transcription	NHDF-Ad	bronchial
50	chr11:65822000-65835800	Strong transcription	Fetal Lung	lung

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