Variant report

Variant	rs13328870
Chromosome Location	chr11:65939749-65939750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:65938428..65942314-chr11:65944673..65947481,3	MCF-7	breast:
2	chr11:65937498..65939966-chr11:65945396..65947258,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10750773	0.83[AMR][1000 genomes]
rs10791844	1.00[AMR][1000 genomes]
rs11227418	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823726	0.87[AFR][1000 genomes]
rs12290898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1627404	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34725821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs495684	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs501690	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs501979	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs541268	0.93[AFR][1000 genomes]
rs548858	0.83[AMR][1000 genomes]
rs558480	0.83[AMR][1000 genomes]
rs561948	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6591206	1.00[AFR][1000 genomes]
rs7131001	0.83[AMR][1000 genomes]
rs7937763	0.83[AMR][1000 genomes]
rs9326366	0.83[AMR][1000 genomes]
rs9326367	0.83[AMR][1000 genomes]
rs9326368	1.00[AMR][1000 genomes]
rs9326369	1.00[AMR][1000 genomes]
rs9667583	0.83[AMR][1000 genomes]
rs9667922	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
5	esv1804701	chr11:65922589-65957003	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv1813498	chr11:65922589-65957003	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv362	chr11:65927138-65948793	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv3517341	chr11:65932626-65940474	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv3517344	chr11:65932976-65940374	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv1806665	chr11:65933975-65957003	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv1809732	chr11:65934549-65956577	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65905200-65947000	Weak transcription	Fetal Lung	lung
2	chr11:65905800-65952800	Weak transcription	Fetal Stomach	stomach
3	chr11:65906000-65960200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr11:65911000-65943200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:65913400-65951000	Weak transcription	Spleen	Spleen
6	chr11:65918000-65949200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:65919000-65939800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr11:65920400-65954800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:65924800-65943200	Weak transcription	NHEK	skin
10	chr11:65925000-65939800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:65925400-65955000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:65925600-65952800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr11:65925800-65955000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:65927200-65939800	Weak transcription	Lung	lung
15	chr11:65927200-65951000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:65927200-65951000	Weak transcription	Pancreas	Pancrea
17	chr11:65927200-65958400	Weak transcription	Gastric	stomach
18	chr11:65927400-65939800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:65927600-65947600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:65928600-65939800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr11:65928600-65945000	Weak transcription	GM12878-XiMat	blood
22	chr11:65928800-65957000	Weak transcription	Left Ventricle	heart
23	chr11:65929400-65960200	Weak transcription	HSMM	muscle
24	chr11:65929600-65944400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:65929600-65946400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr11:65929600-65977800	Weak transcription	HSMMtube	muscle
27	chr11:65929800-65944400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr11:65930000-65960200	Weak transcription	Colon Smooth Muscle	Colon
29	chr11:65930000-65960800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr11:65930200-65939800	Weak transcription	Esophagus	oesophagus
31	chr11:65930200-65942600	Weak transcription	Adipose Nuclei	Adipose
32	chr11:65930800-65939800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:65932800-65942400	Weak transcription	Placenta	Placenta
34	chr11:65933000-65939800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:65934400-65949200	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr11:65936000-65947000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr11:65936400-65956800	Weak transcription	Fetal Intestine Small	intestine
38	chr11:65936800-65939800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr11:65937000-65956000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:65937400-65958200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:65937800-65950600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr11:65938200-65946800	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr11:65938200-65953000	Weak transcription	Thymus	Thymus
44	chr11:65938400-65978000	Weak transcription	Aorta	Aorta
45	chr11:65938600-65949000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr11:65938600-65960800	Weak transcription	Dnd41	blood
47	chr11:65938800-65939800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:65939400-65939800	Enhancers	Muscle Satellite Cultured Cells	--
49	chr11:65939400-65940200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:65939400-65940200	Strong transcription	Stomach Smooth Muscle	stomach

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