Variant report

Variant	rs9326368
Chromosome Location	chr11:65827700-65827701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:65826399-65827800	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:65769145..65771135-chr11:65826724..65830064,3	MCF-7	breast:
2	chr11:65666218..65668935-chr11:65825625..65827818,2	K562	blood:
3	chr11:65826244..65833224-chr11:65834439..65839387,11	MCF-7	breast:

Variant related genes	Relation type
SF3B2	TF binding region
ENSG00000175115	Chromatin interaction
ENSG00000175376	Chromatin interaction
ENSG00000175592	Chromatin interaction
ENSG00000255038	Chromatin interaction
ENSG00000175334	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10750773	0.83[AMR][1000 genomes]
rs10791844	0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11227418	1.00[AMR][1000 genomes]
rs11227421	1.00[AMR][1000 genomes]
rs11227422	1.00[AMR][1000 genomes]
rs12290898	1.00[AMR][1000 genomes]
rs13328870	1.00[AMR][1000 genomes]
rs1627404	1.00[AMR][1000 genomes]
rs34725821	1.00[AMR][1000 genomes]
rs3814747	0.81[ASW][hapmap]
rs495684	1.00[AMR][1000 genomes]
rs501690	1.00[AMR][1000 genomes]
rs501979	1.00[AMR][1000 genomes]
rs548858	0.83[AMR][1000 genomes]
rs558480	0.83[AMR][1000 genomes]
rs561948	1.00[AMR][1000 genomes]
rs7131001	0.83[AMR][1000 genomes]
rs7937692	0.83[LWK][hapmap]
rs7937763	0.83[AMR][1000 genomes]
rs9326366	0.83[AMR][1000 genomes]
rs9326367	0.83[AMR][1000 genomes]
rs9326369	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9667583	0.83[AMR][1000 genomes]
rs9667922	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	nsv897768	chr11:65715210-65842064	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
3	nsv897769	chr11:65727799-65828625	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
4	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
5	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65821000-65835600	Weak transcription	Right Atrium	heart
2	chr11:65821000-65836600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:65821000-65836600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:65821200-65828200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr11:65821200-65829000	Weak transcription	Fetal Heart	heart
6	chr11:65821200-65832000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:65821200-65832200	Strong transcription	Fetal Muscle Leg	muscle
8	chr11:65821200-65835400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:65821200-65835600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:65821200-65836000	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:65821200-65836000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:65821200-65836000	Strong transcription	Fetal Intestine Large	intestine
13	chr11:65821200-65836000	Strong transcription	NHLF	lung
14	chr11:65821200-65836200	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:65821200-65836600	Strong transcription	Fetal Stomach	stomach
16	chr11:65821400-65827800	Weak transcription	Fetal Brain Male	brain
17	chr11:65821400-65830400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:65821400-65831400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:65821400-65831800	Strong transcription	Fetal Intestine Small	intestine
20	chr11:65821400-65831800	Strong transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:65821400-65833800	Strong transcription	Placenta	Placenta
22	chr11:65821400-65835200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr11:65821400-65835200	Strong transcription	Fetal Muscle Trunk	muscle
24	chr11:65821400-65835400	Strong transcription	Stomach Smooth Muscle	stomach
25	chr11:65821400-65835600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:65821400-65835600	Strong transcription	Brain Germinal Matrix	brain
27	chr11:65821400-65835800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr11:65821400-65836600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:65821600-65829200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:65821600-65835400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:65821600-65835400	Strong transcription	Fetal Thymus	thymus
32	chr11:65821600-65836000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:65821800-65831800	Strong transcription	Lung	lung
34	chr11:65821800-65832000	Strong transcription	Brain Cingulate Gyrus	brain
35	chr11:65821800-65832800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
36	chr11:65821800-65833600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:65821800-65833800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:65821800-65835400	Strong transcription	Spleen	Spleen
39	chr11:65821800-65835800	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr11:65821800-65835800	Strong transcription	K562	blood
41	chr11:65821800-65836000	Strong transcription	H9 Cell Line	embryonic stem cell
42	chr11:65821800-65836000	Strong transcription	Primary T cells from cord blood	blood
43	chr11:65821800-65836600	Strong transcription	Thymus	Thymus
44	chr11:65822000-65831600	Strong transcription	Esophagus	oesophagus
45	chr11:65822000-65831600	Strong transcription	Right Ventricle	heart
46	chr11:65822000-65831600	Strong transcription	HSMMtube	muscle
47	chr11:65822000-65832200	Strong transcription	Brain Inferior Temporal Lobe	brain
48	chr11:65822000-65832400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr11:65822000-65833000	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:65822000-65833000	Strong transcription	Primary T killer memory cells from peripheral blood	blood

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