Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10501363	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10896574	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10896575	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10896582	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896587	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10896588	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11228936	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11228937	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11228941	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11228944	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1124847	0.80[EUR][1000 genomes]
rs12225155	0.82[ASN][1000 genomes]
rs1943479	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1943486	0.90[ASN][1000 genomes]
rs1943489	0.80[EUR][1000 genomes]
rs2077189	0.81[EUR][1000 genomes]
rs2903267	0.80[EUR][1000 genomes]
rs3017571	0.80[EUR][1000 genomes]
rs3017574	0.81[EUR][1000 genomes]
rs3017575	0.81[EUR][1000 genomes]
rs3758922	0.90[ASN][1000 genomes]
rs716745	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs721608	0.82[EUR][1000 genomes]
rs72918002	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs948849	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56947800-56952000	Enhancers	Spleen	Spleen
2	chr11:56948200-56959200	Weak transcription	Gastric	stomach
3	chr11:56948400-56950600	Flanking Active TSS	Fetal Brain Female	brain
4	chr11:56948400-56959400	Weak transcription	Right Atrium	heart
5	chr11:56948600-56955400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:56948800-56950400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
7	chr11:56948800-56952200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:56948800-56953200	Enhancers	Fetal Brain Male	brain
9	chr11:56948800-56954800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:56949000-56951000	Weak transcription	Stomach Mucosa	stomach
11	chr11:56949200-56955000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:56949400-56962600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:56949600-56950400	Enhancers	Fetal Muscle Leg	muscle
14	chr11:56949600-56951000	Weak transcription	Fetal Stomach	stomach
15	chr11:56950200-56950400	Enhancers	Fetal Thymus	thymus
16	chr11:56950200-56950800	Active TSS	Brain Germinal Matrix	brain
17	chr11:56950200-56951400	Weak transcription	Esophagus	oesophagus
18	chr11:56950200-56954000	Weak transcription	Lung	lung
19	chr11:56950200-56955200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:56950200-56960400	Weak transcription	Right Ventricle	heart
21	chr11:56950200-56969800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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