Variant report

Variant	rs10897453
Chromosome Location	chr11:63620253-63620254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63618627..63621390-chr11:63642478..63644559,2	MCF-7	breast:
2	chr11:63618262..63620872-chr11:63622247..63624300,2	MCF-7	breast:
3	chr11:63614156..63616576-chr11:63619519..63621542,3	K562	blood:
4	chr11:63618143..63620450-chr11:63679037..63681857,2	K562	blood:

Variant related genes	Relation type
ENSG00000167771	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10736731	0.87[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.88[LWK][hapmap];0.96[MKK][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10751001	0.93[ASN][1000 genomes]
rs10792421	0.87[ASW][hapmap];0.96[CEU][hapmap];0.85[CHB][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10792422	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10792423	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10897452	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10897454	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11231600	0.96[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11231606	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11231624	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11231628	0.93[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs11231637	0.96[CEU][hapmap];0.81[GIH][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs11231640	0.93[ASW][hapmap];0.85[CEU][hapmap];0.93[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.92[LWK][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11605500	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12277481	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12576275	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1486936	0.96[CEU][hapmap];0.81[GIH][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs1872772	0.82[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.82[LWK][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2840079	0.93[ASW][hapmap];0.85[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap];0.88[LWK][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs320109	0.96[CEU][hapmap];0.81[GIH][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs3802941	0.87[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.88[LWK][hapmap];0.87[MKK][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3850943	0.93[ASN][1000 genomes]
rs4143327	0.89[EUR][1000 genomes]
rs4963433	0.93[ASN][1000 genomes]
rs4980503	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4980505	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4980507	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4980528	0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.88[LWK][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4980529	0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.93[TSI][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4980532	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4980533	0.93[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.88[LWK][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61604723	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6421686	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6591825	0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.92[LWK][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7102006	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7105288	0.96[CEU][hapmap];0.81[GIH][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs7108375	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7110843	0.81[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.92[LWK][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7118913	0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.88[LWK][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7121067	0.82[EUR][1000 genomes]
rs72934134	0.83[AFR][1000 genomes]
rs7937314	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7939351	0.84[EUR][1000 genomes]
rs7939416	0.88[ASN][1000 genomes]
rs7944519	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7946503	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7948656	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs923247	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs928948	0.93[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv1839119	chr11:63615554-63680052	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63609600-63629600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:63610200-63633200	Weak transcription	Fetal Brain Male	brain
3	chr11:63611800-63629800	Weak transcription	Aorta	Aorta
4	chr11:63613000-63622600	Weak transcription	Brain Germinal Matrix	brain
5	chr11:63613200-63625600	Weak transcription	HUVEC	blood vessel
6	chr11:63613200-63626200	Weak transcription	NHLF	lung
7	chr11:63613200-63632400	Weak transcription	Fetal Brain Female	brain
8	chr11:63613200-63633000	Weak transcription	HSMM	muscle
9	chr11:63613800-63625400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:63614800-63621000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr11:63615800-63620800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:63615800-63622400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:63615800-63625400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr11:63615800-63628200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:63615800-63633200	Weak transcription	HMEC	breast
16	chr11:63615800-63634800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:63615800-63636000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:63615800-63636000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr11:63615800-63636000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:63616400-63621600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:63616600-63621200	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr11:63616800-63624800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:63617000-63621000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr11:63617000-63629600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:63617200-63629400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:63617600-63622600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:63618000-63620800	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr11:63618000-63623000	Enhancers	Adipose Nuclei	Adipose
29	chr11:63618400-63620400	Enhancers	Brain Cingulate Gyrus	brain
30	chr11:63618400-63621200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:63618600-63621200	Enhancers	Primary T cells from cord blood	blood
32	chr11:63618600-63625800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr11:63618800-63620400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr11:63618800-63623600	Weak transcription	Pancreas	Pancrea
35	chr11:63618800-63624000	Weak transcription	Gastric	stomach
36	chr11:63618800-63624800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:63618800-63624800	Weak transcription	Spleen	Spleen
38	chr11:63618800-63625600	Weak transcription	Left Ventricle	heart
39	chr11:63618800-63625800	Weak transcription	Colonic Mucosa	Colon
40	chr11:63618800-63626600	Weak transcription	Lung	lung
41	chr11:63618800-63629000	Weak transcription	Fetal Muscle Trunk	muscle
42	chr11:63618800-63629000	Weak transcription	Fetal Muscle Leg	muscle
43	chr11:63619000-63620400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:63619000-63620600	Weak transcription	Fetal Stomach	stomach
45	chr11:63619000-63621000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr11:63619000-63623600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr11:63619000-63632600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr11:63619200-63622000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr11:63619200-63624800	Weak transcription	Hela-S3	cervix
50	chr11:63619200-63626000	Weak transcription	Osteobl	bone

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