Variant report

Variant	rs7948656
Chromosome Location	chr11:63618382-63618383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63617973..63618740-chr18:27921793..27922523,2	MCF-7	breast:
2	chr11:63604047..63606273-chr11:63618299..63619902,2	K562	blood:
3	chr11:63618116..63619844-chr11:63626864..63629830,2	MCF-7	breast:
4	chr11:63610591..63619595-chr11:63634759..63639809,13	MCF-7	breast:
5	chr11:63618262..63620872-chr11:63622247..63624300,2	MCF-7	breast:
6	chr11:63618143..63620450-chr11:63679037..63681857,2	K562	blood:

Variant related genes	Relation type
ENSG00000167771	Chromatin interaction
ENSG00000072518	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10736731	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10751001	0.95[ASN][1000 genomes]
rs10792421	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10792422	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10792423	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10897452	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10897453	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10897454	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11231600	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11231606	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11231624	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11231628	0.87[ASN][1000 genomes]
rs11231637	0.89[EUR][1000 genomes]
rs11231640	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11605500	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12277481	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12576275	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1486936	0.89[EUR][1000 genomes]
rs1872772	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2840079	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs320109	0.89[EUR][1000 genomes]
rs3802941	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3850943	0.95[ASN][1000 genomes]
rs4143327	0.89[EUR][1000 genomes]
rs4963433	0.95[ASN][1000 genomes]
rs4980503	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4980505	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4980507	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4980528	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4980529	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4980532	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4980533	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61604723	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6421686	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6591825	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7102006	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7105288	0.89[EUR][1000 genomes]
rs7108375	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7110843	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7118913	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7121067	0.82[EUR][1000 genomes]
rs72934134	0.83[AFR][1000 genomes]
rs7937314	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7939351	0.84[EUR][1000 genomes]
rs7939416	0.90[ASN][1000 genomes]
rs7944519	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7946503	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs923247	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs928948	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv1839119	chr11:63615554-63680052	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63608400-63618600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:63609400-63618400	Weak transcription	Ovary	ovary
3	chr11:63609600-63619200	Weak transcription	HSMMtube	muscle
4	chr11:63609600-63629600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:63610200-63633200	Weak transcription	Fetal Brain Male	brain
6	chr11:63611000-63620200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:63611800-63629800	Weak transcription	Aorta	Aorta
8	chr11:63612600-63618400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:63613000-63618400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:63613000-63618600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:63613000-63622600	Weak transcription	Brain Germinal Matrix	brain
12	chr11:63613200-63625600	Weak transcription	HUVEC	blood vessel
13	chr11:63613200-63626200	Weak transcription	NHLF	lung
14	chr11:63613200-63632400	Weak transcription	Fetal Brain Female	brain
15	chr11:63613200-63633000	Weak transcription	HSMM	muscle
16	chr11:63613400-63618600	Weak transcription	Osteobl	bone
17	chr11:63613400-63619000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:63613400-63619000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:63613600-63618400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:63613600-63619000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:63613800-63618400	Weak transcription	K562	blood
22	chr11:63613800-63625400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:63614600-63619600	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr11:63614800-63621000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr11:63615000-63618400	Weak transcription	Liver	Liver
26	chr11:63615200-63619000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:63615400-63618400	Weak transcription	Colonic Mucosa	Colon
28	chr11:63615400-63618400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr11:63615400-63618600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:63615600-63618400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:63615600-63618400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr11:63615600-63618400	Weak transcription	Psoas Muscle	Psoas
33	chr11:63615600-63618400	Weak transcription	Hela-S3	cervix
34	chr11:63615600-63618600	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr11:63615600-63619000	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr11:63615600-63619000	Weak transcription	NHDF-Ad	bronchial
37	chr11:63615800-63618400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr11:63615800-63618400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr11:63615800-63618400	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr11:63615800-63618400	Weak transcription	Right Atrium	heart
41	chr11:63615800-63618800	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr11:63615800-63619000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr11:63615800-63619000	Weak transcription	Fetal Kidney	kidney
44	chr11:63615800-63619000	Weak transcription	Stomach Smooth Muscle	stomach
45	chr11:63615800-63620800	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr11:63615800-63622400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:63615800-63625400	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr11:63615800-63628200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr11:63615800-63633200	Weak transcription	HMEC	breast
50	chr11:63615800-63634800	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links