Variant report

Variant	rs2840079
Chromosome Location	chr11:63688693-63688694
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:63688671-63688858	Kidney_OC	kidney:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
2	RAD21	chr11:63688615-63689012	A549	lung:	n/a	chr11:63688748-63688767 chr11:63688750-63688762
3	CTCF	chr11:63688660-63688810	GM12864	blood:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
4	MAZ	chr11:63688667-63688820	GM12878	blood:	n/a	n/a
5	CTCF	chr11:63688600-63688912	H1-hESC	embryonic stem cell:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
6	MAX	chr11:63688601-63688820	K562	blood:	n/a	n/a
7	CTCF	chr11:63688680-63688830	GM06990	blood:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
8	RAD21	chr11:63688639-63688867	SK-N-SH_RA	brain:	n/a	chr11:63688748-63688767 chr11:63688750-63688762
9	ZBTB7A	chr11:63688609-63688841	HepG2	liver:	n/a	n/a
10	CTCF	chr11:63688627-63688964	Spleen_OC	spleen:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
11	SMC3	chr11:63688584-63688912	K562	blood:	n/a	chr11:63688752-63688766
12	CTCF	chr11:63688660-63688810	HMEC	breast:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
13	CTCF	chr11:63688656-63688905	GM13977	blood:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
14	CTCF	chr11:63688660-63688810	HCM	heart:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
15	ATF2	chr11:63688498-63688921	H1-hESC	embryonic stem cell:	n/a	n/a
16	CTCF	chr11:63688572-63688962	GM12878	blood:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
17	SIN3AK20	chr11:63688339-63688895	H1-hESC	embryonic stem cell:	n/a	n/a
18	RAD21	chr11:63688607-63688842	K562	blood:	n/a	chr11:63688748-63688767 chr11:63688750-63688762
19	CTCF	chr11:63688680-63688830	GM12870	blood:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
20	CTCF	chr11:63688629-63688903	Fibrobl	skin:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
21	RAD21	chr11:63688644-63688842	K562	blood:	n/a	chr11:63688748-63688767 chr11:63688750-63688762
22	CTCF	chr11:63688660-63688810	NB4	blood:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
23	CTCF	chr11:63688640-63688790	HCFaa	heart:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
24	POLR2A	chr11:63688645-63688889	H1-hESC	embryonic stem cell:	n/a	n/a
25	CTCF	chr11:63688689-63688845	GM20000	blood:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
26	CTCF	chr11:63688634-63688937	GM19239	blood:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
27	MYC	chr11:63688682-63688835	HepG2	liver:	n/a	n/a
28	CTCF	chr11:63688680-63688830	HCPEpiC	choroid plexus:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
29	JUND	chr11:63688585-63688886	H1-hESC	embryonic stem cell:	n/a	n/a
30	RAD21	chr11:63688533-63688923	HepG2	liver:	n/a	chr11:63688748-63688767 chr11:63688750-63688762
31	CTCF	chr11:63688615-63688905	GM12891	blood:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
32	UBTF	chr11:63688685-63688802	K562	blood:	n/a	n/a
33	CTCF	chr11:63688660-63688810	HFF-Myc	foreskin:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
34	RAD21	chr11:63688567-63688986	HepG2	liver:	n/a	chr11:63688748-63688767 chr11:63688750-63688762
35	CTCFL	chr11:63688632-63688842	K562	blood:	n/a	chr11:63688752-63688761
36	CTCF	chr11:63688620-63688770	HEK293	kidney:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
37	CTCF	chr11:63688680-63688830	HVMF	connective:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
38	ZNF143	chr11:63688593-63688935	K562	blood:	n/a	n/a
39	CTCF	chr11:63688692-63688846	NHEK	skin:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
40	CTCF	chr11:63688600-63688750	HRE	kidney:	n/a	n/a
41	TBL1XR1	chr11:63688561-63688765	K562	blood:	n/a	n/a
42	MYC	chr11:63688465-63688920	K562	blood:	n/a	chr11:63688568-63688577 chr11:63688565-63688575
43	CTCF	chr11:63688618-63688939	A549	lung:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
44	CTCF	chr11:63688620-63688770	A549	lung:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
45	MYC	chr11:63688603-63688903	H1-hESC	embryonic stem cell:	n/a	n/a
46	CTCF	chr11:63688503-63688953	HepG2	liver:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
47	ZBTB7A	chr11:63688347-63688886	K562	blood:	n/a	n/a
48	CTCF	chr11:63688660-63688810	HPAF	blood vessel:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
49	CTCF	chr11:63688561-63688845	A549	lung:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765
50	CTCF	chr11:63688660-63688810	K562	blood:	n/a	chr11:63688750-63688768 chr11:63688751-63688767 chr11:63688745-63688766 chr11:63688752-63688765 chr11:63688752-63688765

No.	Distal block	Cell Line	Cell type
1	chr11:63684287..63687288-chr11:63687997..63690522,4	MCF-7	breast:
2	chr11:63687365..63689977-chr11:63690538..63692122,2	K562	blood:
3	chr11:63686655..63689035-chr11:63752161..63754305,2	K562	blood:
4	chr11:63535119..63536110-chr11:63688278..63689081,3	K562	blood:
5	chr11:63687502..63689214-chr11:63695496..63697632,2	MCF-7	breast:
6	chr11:63686068..63688913-chr11:63752506..63754962,2	MCF-7	breast:
7	chr11:63687862..63689839-chr11:63702053..63703674,2	MCF-7	breast:
8	chr11:63682242..63690244-chr11:63703955..63713214,18	K562	blood:
9	chr11:63683456..63690158-chr11:63704393..63714412,17	K562	blood:

Variant related genes	Relation type
RCOR2	TF binding region
ENSG00000167771	Chromatin interaction
ENSG00000167770	Chromatin interaction
ENSG00000110583	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10736731	0.85[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10792421	0.89[CEU][hapmap];0.90[JPT][hapmap];0.88[LWK][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10792422	0.86[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10792423	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10897452	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10897453	0.93[ASW][hapmap];0.85[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap];0.88[LWK][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10897454	0.93[ASW][hapmap];0.89[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.88[LWK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11231600	0.89[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs11231624	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11231628	0.80[CHD][hapmap];0.90[JPT][hapmap]
rs11231637	0.89[CEU][hapmap];0.86[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs11231640	0.86[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11231646	0.85[CEU][hapmap];0.88[CHB][hapmap]
rs11605500	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12277481	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12576275	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1486936	0.89[CEU][hapmap];0.86[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs1872772	0.89[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs320109	0.89[CEU][hapmap];0.86[GIH][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs3802941	0.88[CEU][hapmap];0.82[CHB][hapmap];0.86[GIH][hapmap];0.89[MEX][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4143327	0.88[EUR][1000 genomes]
rs480211	0.81[TSI][hapmap]
rs4980503	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4980505	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4980507	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4980528	0.89[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4980529	0.89[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4980532	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4980533	0.86[ASW][hapmap];0.89[CEU][hapmap];0.87[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs540389	0.81[TSI][hapmap]
rs6421686	0.83[EUR][1000 genomes]
rs6591825	0.89[CEU][hapmap];0.87[CHB][hapmap];0.80[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7102006	0.89[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7105288	0.89[CEU][hapmap];0.86[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs7108375	0.89[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7110843	0.85[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7118913	0.89[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7121067	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7937314	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7944519	0.93[ASW][hapmap];0.89[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.88[LWK][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7948656	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs923247	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs928948	0.80[CHD][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv468590	chr11:63639881-63783352	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv555181	chr11:63639881-63783352	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv897629	chr11:63664882-63866959	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv897630	chr11:63664882-63924446	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
9	nsv897632	chr11:63670787-63688693	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	14 gene(s)	inside rSNPs	diseases
10	nsv897633	chr11:63670787-63691049	Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	14 gene(s)	inside rSNPs	diseases
11	nsv897634	chr11:63670787-63698538	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	14 gene(s)	inside rSNPs	diseases
12	nsv897635	chr11:63674926-63688693	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	14 gene(s)	inside rSNPs	diseases
13	nsv897636	chr11:63676067-63688693	Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	14 gene(s)	inside rSNPs	diseases
14	nsv897637	chr11:63676067-63691049	Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	14 gene(s)	inside rSNPs	diseases
15	nsv897638	chr11:63676562-63688693	Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2840079	MS4A12	cis	parietal	SCAN
rs2840079	SLC22A20	cis	parietal	SCAN
rs2840079	HNRNPUL2	cis	parietal	SCAN
rs2840079	MS4A6E	cis	parietal	SCAN

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63682600-63688800	Active TSS	H9 Cell Line	embryonic stem cell
2	chr11:63683200-63688800	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr11:63685400-63688800	Enhancers	Fetal Lung	lung
4	chr11:63685400-63689000	Enhancers	Spleen	Spleen
5	chr11:63685600-63688800	Enhancers	Fetal Thymus	thymus
6	chr11:63686000-63688800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:63687000-63689000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:63687200-63688800	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:63687400-63688800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:63687400-63688800	Enhancers	Placenta Amnion	Placenta Amnion
11	chr11:63687400-63689600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:63687600-63688800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:63687600-63688800	Bivalent Enhancer	Fetal Stomach	stomach
14	chr11:63687600-63689400	Enhancers	Placenta	Placenta
15	chr11:63687800-63688800	Active TSS	HUES64 Cell Line	embryonic stem cell
16	chr11:63687800-63689000	Enhancers	Right Ventricle	heart
17	chr11:63687800-63689200	Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr11:63687800-63689200	Enhancers	Fetal Heart	heart
19	chr11:63688000-63688800	Enhancers	Fetal Muscle Leg	muscle
20	chr11:63688000-63689000	Enhancers	Brain Anterior Caudate	brain
21	chr11:63688000-63689400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr11:63688000-63690200	Weak transcription	Esophagus	oesophagus
23	chr11:63688200-63688800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
24	chr11:63688200-63688800	Enhancers	K562	blood
25	chr11:63688200-63689000	Enhancers	Fetal Intestine Large	intestine
26	chr11:63688200-63689000	Flanking Active TSS	HepG2	liver
27	chr11:63688200-63689200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
28	chr11:63688200-63690600	Enhancers	Fetal Intestine Small	intestine
29	chr11:63688200-63691000	Enhancers	Duodenum Mucosa	Duodenum
30	chr11:63688400-63688800	Enhancers	Primary T cells fromperipheralblood	blood
31	chr11:63688400-63688800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:63688400-63689000	Enhancers	Brain Germinal Matrix	brain
33	chr11:63688400-63689200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr11:63688400-63689200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr11:63688400-63689200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr11:63688600-63688800	Active TSS	HUES48 Cell Line	embryonic stem cell
37	chr11:63688600-63688800	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:63688600-63688800	Enhancers	Primary B cells from peripheral blood	blood
39	chr11:63688600-63688800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:63688600-63688800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr11:63688600-63688800	Enhancers	Ovary	ovary
42	chr11:63688600-63688800	Enhancers	Thymus	Thymus
43	chr11:63688600-63689000	Enhancers	H1 Cell Line	embryonic stem cell
44	chr11:63688600-63689000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:63688600-63689000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:63688600-63689200	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr11:63688600-63689200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr11:63688600-63690400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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