Variant report

Variant	rs10898281
Chromosome Location	chr11:84345829-84345830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84189421..84191994-chr11:84344935..84346949,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10792760	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10792765	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10898248	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10898249	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10898250	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10898251	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10898257	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10898260	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs10898263	1.00[CHB][hapmap]
rs10898264	0.81[CHB][hapmap]
rs10898273	0.87[CHB][hapmap]
rs10898274	0.87[CHB][hapmap];0.80[CHD][hapmap];0.81[ASN][1000 genomes]
rs10898275	0.87[CHB][hapmap];0.81[CHD][hapmap];0.81[ASN][1000 genomes]
rs10898278	0.87[CHB][hapmap];0.95[CHD][hapmap];0.84[ASN][1000 genomes]
rs11234056	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11234057	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs11234060	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs11234063	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs11234064	0.87[CHB][hapmap]
rs11234067	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11234070	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11234073	0.81[CHB][hapmap]
rs11234076	0.86[CHB][hapmap]
rs11234095	0.93[CHB][hapmap];0.80[CHD][hapmap];0.81[ASN][1000 genomes]
rs11234103	0.88[ASN][1000 genomes]
rs11234110	0.86[CHB][hapmap]
rs11234111	0.81[CHB][hapmap];0.86[CHD][hapmap]
rs12274936	0.86[ASW][hapmap]
rs12294169	0.87[ASW][hapmap]
rs12365964	0.81[CHB][hapmap]
rs12575888	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs17807944	0.87[ASW][hapmap];0.83[CHD][hapmap];0.82[GIH][hapmap];0.83[LWK][hapmap];0.81[YRI][hapmap];0.92[AFR][1000 genomes]
rs1940067	0.93[CHB][hapmap]
rs1940073	0.86[CHB][hapmap]
rs1940085	0.93[CHB][hapmap]
rs1940096	0.81[CHB][hapmap];0.80[ASN][1000 genomes]
rs4084390	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs56098997	0.86[ASN][1000 genomes]
rs6592185	0.87[CHB][hapmap]
rs6592194	0.87[CHB][hapmap]
rs7119480	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs7123506	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs7127761	0.93[CHB][hapmap]
rs7128948	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs7937583	0.93[CHB][hapmap]
rs7940159	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs7951686	0.93[CHB][hapmap];0.95[CHD][hapmap];0.85[ASN][1000 genomes]
rs948141	0.81[CHB][hapmap]
rs948142	0.81[CHB][hapmap]
rs9645693	0.87[CHB][hapmap];0.95[CHD][hapmap];0.87[ASN][1000 genomes]
rs9645701	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv898031	chr11:84060342-84379671	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1047875	chr11:84150376-84380393	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv917176	chr11:84157998-84419488	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1047342	chr11:84187214-84380393	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv555612	chr11:84222437-84415122	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv468766	chr11:84267185-84345829	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv555614	chr11:84267185-84345829	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv898032	chr11:84274481-84364527	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv1037047	chr11:84290572-84414586	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv541106	chr11:84290572-84414586	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv1053669	chr11:84300946-84382470	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1049964	chr11:84315563-84578721	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv898033	chr11:84319959-84350646	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv898034	chr11:84319959-84364527	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1047004	chr11:84328458-84364594	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv555615	chr11:84334144-84541403	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84340800-84346000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:84344800-84346000	Weak transcription	HSMMtube	muscle
3	chr11:84345200-84346000	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr11:84345800-84346200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:84345800-84346200	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr11:84345800-84346400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:84345800-84346400	Enhancers	Pancreas	Pancrea

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