Variant report

Variant	rs948142
Chromosome Location	chr11:84274385-84274386
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:84266119..84270134-chr11:84272425..84277265,4	MCF-7	breast:
2	chr11:84265904..84268550-chr11:84272866..84275425,2	K562	blood:
3	chr11:84270260..84272879-chr11:84274158..84275697,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10792760	0.94[CHB][hapmap]
rs10792765	0.81[CHB][hapmap]
rs10898248	0.94[CHB][hapmap]
rs10898249	0.94[CHB][hapmap]
rs10898250	0.94[CHB][hapmap]
rs10898251	0.94[CHB][hapmap]
rs10898257	0.81[CHB][hapmap]
rs10898262	0.92[ASN][1000 genomes]
rs10898263	0.87[CHB][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10898264	0.84[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10898265	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10898266	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10898273	0.81[CHB][hapmap]
rs10898274	0.81[CHB][hapmap]
rs10898275	0.81[CHB][hapmap]
rs10898278	0.81[CHB][hapmap]
rs10898281	0.81[CHB][hapmap]
rs11234056	0.93[CHB][hapmap]
rs11234057	0.94[CHB][hapmap]
rs11234060	0.94[CHB][hapmap]
rs11234063	0.94[CHB][hapmap]
rs11234064	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11234070	0.87[CHB][hapmap]
rs11234073	0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11234076	0.80[CEU][hapmap];0.82[GIH][hapmap];0.83[JPT][hapmap];0.84[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12223009	0.92[ASN][1000 genomes]
rs12575888	0.94[CHB][hapmap]
rs17807944	0.81[CHB][hapmap]
rs1940074	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1940085	0.87[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1940096	0.87[CHB][hapmap]
rs4084390	0.81[CHB][hapmap]
rs4474461	0.81[CHB][hapmap]
rs500394	0.80[EUR][1000 genomes]
rs515819	0.83[EUR][1000 genomes]
rs522231	0.83[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.90[EUR][1000 genomes]
rs568997	0.83[ASW][hapmap];0.83[JPT][hapmap]
rs61898964	0.97[ASN][1000 genomes]
rs6592185	0.83[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7119480	0.94[CHB][hapmap]
rs7123506	0.94[CHB][hapmap]
rs7127761	0.91[CEU][hapmap];0.87[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7128948	0.94[CHB][hapmap]
rs7937583	0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];0.94[JPT][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7940159	0.94[CHB][hapmap]
rs7951686	0.87[CHB][hapmap]
rs948141	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9645693	0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1038641	chr11:83996453-84334045	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541103	chr11:83996453-84334045	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv898031	chr11:84060342-84379671	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1041755	chr11:84067493-84315623	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv541104	chr11:84067493-84315623	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv817504	chr11:84070883-84301151	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1052925	chr11:84092727-84274689	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1047875	chr11:84150376-84380393	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv917176	chr11:84157998-84419488	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1047342	chr11:84187214-84380393	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv555611	chr11:84190182-84284521	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1040419	chr11:84194827-84287575	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv1035566	chr11:84203688-84340842	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv555612	chr11:84222437-84415122	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv555613	chr11:84244769-84274481	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv468766	chr11:84267185-84345829	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
19	nsv555614	chr11:84267185-84345829	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84264400-84280600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:84269800-84275000	Weak transcription	Fetal Intestine Small	intestine
3	chr11:84270000-84275000	Weak transcription	Fetal Intestine Large	intestine
4	chr11:84270200-84275000	Weak transcription	HepG2	liver
5	chr11:84271200-84274400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:84271600-84275000	Weak transcription	Fetal Brain Male	brain
7	chr11:84271800-84274400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:84271800-84277800	Weak transcription	Brain Germinal Matrix	brain
9	chr11:84273000-84274400	Weak transcription	A549	lung
10	chr11:84273600-84274600	Weak transcription	Liver	Liver
11	chr11:84273800-84274600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:84274200-84275600	Enhancers	Fetal Brain Female	brain
13	chr11:84274200-84275800	Enhancers	Cortex derived primary cultured neurospheres	brain

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