Variant report

Variant	rs9645693
Chromosome Location	chr11:84343679-84343680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10792760	1.00[CHB][hapmap]
rs10792765	0.87[CHB][hapmap]
rs10898248	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs10898249	1.00[CHB][hapmap]
rs10898250	1.00[CHB][hapmap]
rs10898251	1.00[CHB][hapmap]
rs10898257	0.87[CHB][hapmap];1.00[YRI][hapmap]
rs10898263	0.93[CHB][hapmap]
rs10898264	0.81[CHB][hapmap]
rs10898273	0.87[CHB][hapmap]
rs10898274	0.87[CHB][hapmap]
rs10898275	0.87[CHB][hapmap]
rs10898278	0.87[CHB][hapmap];0.90[CHD][hapmap]
rs10898281	0.87[CHB][hapmap];0.95[CHD][hapmap];0.87[ASN][1000 genomes]
rs11234056	1.00[CHB][hapmap]
rs11234057	1.00[CHB][hapmap]
rs11234060	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11234063	1.00[CHB][hapmap]
rs11234064	0.87[CHB][hapmap]
rs11234070	0.93[CHB][hapmap];1.00[YRI][hapmap]
rs11234073	0.81[CHB][hapmap]
rs11234095	0.80[CHB][hapmap]
rs11234103	0.94[ASN][1000 genomes]
rs11234110	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs11234111	1.00[ASW][hapmap];0.82[CHD][hapmap];1.00[YRI][hapmap]
rs12363164	1.00[YRI][hapmap]
rs12365964	0.81[CHB][hapmap];1.00[YRI][hapmap]
rs12575888	1.00[CHB][hapmap]
rs17206044	1.00[YRI][hapmap]
rs17807944	0.88[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap]
rs1940067	0.80[CHB][hapmap]
rs1940073	0.86[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs1940085	0.93[CHB][hapmap]
rs1940096	0.94[CHB][hapmap];1.00[YRI][hapmap]
rs4084390	0.86[CHB][hapmap]
rs4144290	1.00[ASW][hapmap]
rs4474461	0.87[CHB][hapmap]
rs56098997	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7119480	1.00[CHB][hapmap]
rs7123506	1.00[CHB][hapmap]
rs7127761	0.80[CHB][hapmap]
rs7128948	1.00[CHB][hapmap]
rs7937583	0.80[CHB][hapmap]
rs7940159	1.00[CHB][hapmap]
rs7951686	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs948141	0.94[CHB][hapmap]
rs948142	0.94[CHB][hapmap]
rs9645701	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv898031	chr11:84060342-84379671	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1047875	chr11:84150376-84380393	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv917176	chr11:84157998-84419488	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1047342	chr11:84187214-84380393	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv555612	chr11:84222437-84415122	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv468766	chr11:84267185-84345829	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv555614	chr11:84267185-84345829	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv898032	chr11:84274481-84364527	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv1037047	chr11:84290572-84414586	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv541106	chr11:84290572-84414586	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv1053669	chr11:84300946-84382470	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	nsv1049964	chr11:84315563-84578721	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv898033	chr11:84319959-84350646	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv898034	chr11:84319959-84364527	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1047004	chr11:84328458-84364594	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv555615	chr11:84334144-84541403	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84340400-84345800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:84340800-84346000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:84342800-84345400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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