Variant report

Variant	rs1940085
Chromosome Location	chr11:84319959-84319960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10792760	0.93[CHB][hapmap]
rs10792765	0.93[CHB][hapmap]
rs10898248	0.93[CHB][hapmap]
rs10898249	0.93[CHB][hapmap]
rs10898250	0.93[CHB][hapmap]
rs10898251	0.93[CHB][hapmap]
rs10898257	0.93[CHB][hapmap]
rs10898260	0.85[CHB][hapmap]
rs10898263	0.93[CHB][hapmap]
rs10898264	0.87[JPT][hapmap]
rs10898266	0.91[JPT][hapmap]
rs10898273	0.93[CHB][hapmap]
rs10898274	0.80[CHB][hapmap]
rs10898275	0.80[CHB][hapmap]
rs10898278	0.80[CHB][hapmap]
rs10898281	0.93[CHB][hapmap]
rs11234056	0.93[CHB][hapmap]
rs11234057	0.93[CHB][hapmap]
rs11234060	0.93[CHB][hapmap]
rs11234063	0.93[CHB][hapmap]
rs11234064	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs11234070	0.86[CHB][hapmap]
rs11234076	0.89[JPT][hapmap];0.82[AMR][1000 genomes]
rs11234095	0.86[CHB][hapmap]
rs12575888	0.93[CHB][hapmap]
rs17807944	0.82[CHB][hapmap]
rs1940067	0.86[CHB][hapmap];0.97[GIH][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs1940073	0.93[CHB][hapmap]
rs1940096	0.87[CHB][hapmap]
rs2226636	0.89[YRI][hapmap]
rs4084390	0.93[CHB][hapmap]
rs4474461	0.80[CHB][hapmap]
rs500394	0.84[JPT][hapmap]
rs522231	0.82[JPT][hapmap]
rs568997	0.89[JPT][hapmap];0.81[YRI][hapmap]
rs6592185	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs6592192	0.80[CEU][hapmap];0.80[EUR][1000 genomes]
rs7103767	0.82[EUR][1000 genomes]
rs7112468	0.81[MKK][hapmap]
rs7119480	0.93[CHB][hapmap]
rs7123506	0.93[CHB][hapmap]
rs7127761	0.86[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap]
rs7128948	0.93[CHB][hapmap]
rs7937583	0.86[CHB][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap]
rs7940159	0.93[CHB][hapmap]
rs7951686	0.86[CHB][hapmap]
rs948141	0.87[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap]
rs948142	0.87[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9645693	0.93[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1038641	chr11:83996453-84334045	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv541103	chr11:83996453-84334045	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv898031	chr11:84060342-84379671	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1047875	chr11:84150376-84380393	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv917176	chr11:84157998-84419488	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1047342	chr11:84187214-84380393	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1045974	chr11:84187214-84708462	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1035566	chr11:84203688-84340842	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv555612	chr11:84222437-84415122	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv468766	chr11:84267185-84345829	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv555614	chr11:84267185-84345829	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv898032	chr11:84274481-84364527	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	nsv1037047	chr11:84290572-84414586	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv541106	chr11:84290572-84414586	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv1053669	chr11:84300946-84382470	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv1049964	chr11:84315563-84578721	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv898033	chr11:84319959-84350646	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv898034	chr11:84319959-84364527	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84317800-84320200	Enhancers	Psoas Muscle	Psoas
2	chr11:84317800-84320600	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr11:84318400-84320200	Enhancers	Colon Smooth Muscle	Colon
4	chr11:84318400-84320200	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr11:84319000-84320200	Enhancers	Aorta	Aorta
6	chr11:84319000-84320400	Enhancers	Fetal Heart	heart
7	chr11:84319400-84320200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:84319400-84320200	Enhancers	Brain Cingulate Gyrus	brain
9	chr11:84319400-84320200	Enhancers	Gastric	stomach
10	chr11:84319600-84320200	Enhancers	Pancreas	Pancrea
11	chr11:84319600-84321600	Weak transcription	Left Ventricle	heart

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