Variant report

Variant	rs10898503
Chromosome Location	chr11:86292522-86292523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86285976..86287836-chr11:86291866..86294445,2	K562	blood:
2	chr11:86292269..86293006-chr8:131474106..131474907,2	MCF-7	breast:
3	chr11:86290858..86293658-chr11:86295184..86297088,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10898504	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234643	1.00[CHD][hapmap]
rs12280555	1.00[CHD][hapmap]
rs7117702	0.80[MKK][hapmap]
rs7122406	1.00[CHD][hapmap]
rs7932664	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1808984	chr11:86282680-86301717	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv555678	chr11:86285994-86305977	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10898503	CTSC	cis	cerebellum	SCAN
rs10898503	ME3	cis	multi-tissue	Pritchard

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86275400-86299400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:86276400-86299800	Weak transcription	Fetal Brain Male	brain
3	chr11:86286000-86299400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:86286400-86298200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:86287600-86293400	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr11:86288600-86293400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:86288600-86293800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:86289800-86293000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:86289800-86293800	Weak transcription	Brain Anterior Caudate	brain
10	chr11:86289800-86303200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:86289800-86303400	Weak transcription	Stomach Mucosa	stomach
12	chr11:86290000-86293600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:86290000-86293800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:86290400-86292600	Weak transcription	Aorta	Aorta
15	chr11:86290600-86298200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:86290600-86299400	Weak transcription	Psoas Muscle	Psoas
17	chr11:86290800-86293800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:86290800-86298200	Weak transcription	HMEC	breast
19	chr11:86290800-86299200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:86291400-86293800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:86291400-86298200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:86291800-86293000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr11:86291800-86293200	Weak transcription	Colon Smooth Muscle	Colon
24	chr11:86291800-86294800	Weak transcription	Fetal Muscle Trunk	muscle
25	chr11:86292000-86292600	Weak transcription	Gastric	stomach
26	chr11:86292000-86292600	Weak transcription	Right Atrium	heart
27	chr11:86292000-86292600	Weak transcription	Right Ventricle	heart
28	chr11:86292000-86294200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr11:86292000-86303800	Weak transcription	Ovary	ovary
30	chr11:86292200-86293200	Weak transcription	Fetal Intestine Large	intestine
31	chr11:86292200-86294400	Enhancers	A549	lung
32	chr11:86292200-86297200	Weak transcription	Fetal Intestine Small	intestine
33	chr11:86292200-86298200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:86292200-86303200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:86292400-86293600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr11:86292400-86298600	Weak transcription	Adipose Nuclei	Adipose

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