Variant report

Variant	rs11234643
Chromosome Location	chr11:86123041-86123042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86117387..86119595-chr11:86121640..86124123,2	K562	blood:
2	chr11:86118884..86121555-chr11:86121901..86123435,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1006586	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs1006587	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs10444371	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs10444372	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs10466700	0.89[AFR][1000 genomes]
rs10466729	0.88[AFR][1000 genomes]
rs10466730	0.85[AFR][1000 genomes]
rs10501622	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs10898503	1.00[CHD][hapmap]
rs11234638	1.00[ASN][1000 genomes]
rs11234647	0.90[YRI][hapmap];0.88[AFR][1000 genomes]
rs11234648	0.85[LWK][hapmap];0.82[MKK][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs11234668	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs11824889	0.87[AFR][1000 genomes]
rs11828283	0.93[AFR][1000 genomes]
rs12270471	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs12270570	0.89[AFR][1000 genomes]
rs12270790	0.85[YRI][hapmap];0.89[AFR][1000 genomes]
rs12272318	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12280555	0.86[ASW][hapmap];1.00[CHD][hapmap];0.94[LWK][hapmap];0.84[MKK][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs12280833	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs12288560	0.85[AFR][1000 genomes]
rs12292316	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12293545	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12420965	1.00[CHB][hapmap]
rs12799562	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs17149063	0.88[AFR][1000 genomes]
rs17149064	0.90[YRI][hapmap];0.88[AFR][1000 genomes]
rs17149169	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs3758877	1.00[CHB][hapmap]
rs3758878	1.00[CHB][hapmap]
rs3824952	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs57969352	1.00[ASN][1000 genomes]
rs628449	1.00[CHB][hapmap]
rs7112309	1.00[CHB][hapmap]
rs7122406	1.00[CHD][hapmap];0.84[MKK][hapmap]
rs7932664	0.86[ASW][hapmap];1.00[CHD][hapmap];0.94[LWK][hapmap];0.85[MKK][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs7944836	1.00[CHB][hapmap]
rs7948566	0.88[AFR][1000 genomes]
rs9645703	1.00[CHB][hapmap];0.83[JPT][hapmap]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86106600-86134600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:86108200-86127400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:86108600-86138600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:86111200-86124200	Weak transcription	Brain Anterior Caudate	brain
5	chr11:86117800-86142200	Weak transcription	Fetal Stomach	stomach
6	chr11:86118200-86124800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:86118200-86130400	Weak transcription	Brain Substantia Nigra	brain
8	chr11:86118200-86151000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:86118400-86131000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:86118400-86142800	Weak transcription	Left Ventricle	heart
11	chr11:86119000-86126200	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:86119000-86127200	Weak transcription	Gastric	stomach
13	chr11:86119200-86125800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:86119400-86135000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:86119600-86142200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:86120600-86124000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:86121200-86127600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:86122000-86124600	Weak transcription	NHEK	skin
19	chr11:86122400-86124600	Strong transcription	Aorta	Aorta
20	chr11:86122600-86125200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:86122600-86133400	Weak transcription	Ovary	ovary

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