Variant report

Variant	rs12272318
Chromosome Location	chr11:86123789-86123790
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86117387..86119595-chr11:86121640..86124123,2	K562	blood:

rs_ID	r²[population]
rs10466700	0.89[AFR][1000 genomes]
rs10466729	0.90[AFR][1000 genomes]
rs10466730	0.85[AFR][1000 genomes]
rs11234638	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234643	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11234647	0.90[AFR][1000 genomes]
rs11234648	0.85[AFR][1000 genomes]
rs11824889	0.87[AFR][1000 genomes]
rs11828283	0.93[AFR][1000 genomes]
rs12270471	0.94[AFR][1000 genomes]
rs12270570	0.89[AFR][1000 genomes]
rs12270790	0.89[AFR][1000 genomes]
rs12280555	0.89[AFR][1000 genomes]
rs12280833	0.90[AFR][1000 genomes]
rs12288560	0.88[AFR][1000 genomes]
rs12292316	0.93[AFR][1000 genomes]
rs12293545	0.93[AFR][1000 genomes]
rs17149063	0.90[AFR][1000 genomes]
rs17149064	0.88[AFR][1000 genomes]
rs57969352	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932664	0.89[AFR][1000 genomes]
rs7948566	0.88[AFR][1000 genomes]

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86106600-86134600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:86108200-86127400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:86108600-86138600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:86111200-86124200	Weak transcription	Brain Anterior Caudate	brain
5	chr11:86117800-86142200	Weak transcription	Fetal Stomach	stomach
6	chr11:86118200-86124800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:86118200-86130400	Weak transcription	Brain Substantia Nigra	brain
8	chr11:86118200-86151000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:86118400-86131000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:86118400-86142800	Weak transcription	Left Ventricle	heart
11	chr11:86119000-86126200	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:86119000-86127200	Weak transcription	Gastric	stomach
13	chr11:86119200-86125800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:86119400-86135000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:86119600-86142200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:86120600-86124000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:86121200-86127600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:86122000-86124600	Weak transcription	NHEK	skin
19	chr11:86122400-86124600	Strong transcription	Aorta	Aorta
20	chr11:86122600-86125200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:86122600-86133400	Weak transcription	Ovary	ovary
22	chr11:86123600-86123800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:86123600-86127600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr11:86123600-86136800	Weak transcription	Brain Hippocampus Middle	brain

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