Variant report

Variant	rs12270471
Chromosome Location	chr11:86122778-86122779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86117387..86119595-chr11:86121640..86124123,2	K562	blood:
2	chr11:86118884..86121555-chr11:86121901..86123435,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10466700	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10466729	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466730	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11234643	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs11234647	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234648	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824889	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11825033	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs11828146	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828283	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12269969	0.82[EUR][1000 genomes]
rs12270570	0.92[AFR][1000 genomes]
rs12270761	1.00[ASN][1000 genomes]
rs12270790	1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12272259	0.83[ASN][1000 genomes]
rs12272318	0.94[AFR][1000 genomes]
rs12276248	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277432	1.00[ASN][1000 genomes]
rs12278188	0.85[CEU][hapmap]
rs12278247	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280555	0.87[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12280833	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281645	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283035	1.00[ASN][1000 genomes]
rs12285249	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12288560	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12289817	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291532	1.00[ASN][1000 genomes]
rs12292316	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293159	1.00[ASN][1000 genomes]
rs12293545	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294756	1.00[ASN][1000 genomes]
rs12804130	1.00[ASN][1000 genomes]
rs12804407	1.00[ASN][1000 genomes]
rs12805940	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs1452136	1.00[ASN][1000 genomes]
rs1452137	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1458381	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17149063	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17149064	1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes]
rs17819176	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs2242142	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2279047	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs34416639	1.00[ASN][1000 genomes]
rs34939684	1.00[ASN][1000 genomes]
rs35686713	1.00[ASN][1000 genomes]
rs3741001	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3741002	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3741003	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781806	1.00[ASN][1000 genomes]
rs3781813	1.00[ASN][1000 genomes]
rs3824953	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs56009909	1.00[ASN][1000 genomes]
rs58228993	1.00[ASN][1000 genomes]
rs58354189	1.00[ASN][1000 genomes]
rs66833360	1.00[ASN][1000 genomes]
rs66872826	1.00[ASN][1000 genomes]
rs7107941	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108053	0.85[JPT][hapmap]
rs7122296	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7122406	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7129977	1.00[ASN][1000 genomes]
rs72953614	1.00[ASN][1000 genomes]
rs7932664	1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7936577	0.85[CEU][hapmap]
rs7948566	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7948764	1.00[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86106600-86134600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:86108200-86127400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:86108600-86138600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:86111200-86124200	Weak transcription	Brain Anterior Caudate	brain
5	chr11:86117800-86142200	Weak transcription	Fetal Stomach	stomach
6	chr11:86118200-86124800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:86118200-86130400	Weak transcription	Brain Substantia Nigra	brain
8	chr11:86118200-86151000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:86118400-86131000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:86118400-86142800	Weak transcription	Left Ventricle	heart
11	chr11:86119000-86126200	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:86119000-86127200	Weak transcription	Gastric	stomach
13	chr11:86119200-86125800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:86119400-86135000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:86119600-86142200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:86120600-86124000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:86121200-86127600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:86122000-86124600	Weak transcription	NHEK	skin
19	chr11:86122400-86124600	Strong transcription	Aorta	Aorta
20	chr11:86122600-86125200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:86122600-86133400	Weak transcription	Ovary	ovary

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