Variant report

Variant	rs12270570
Chromosome Location	chr11:86138113-86138114
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10466700	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10466729	0.97[AFR][1000 genomes]
rs10466730	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11234643	0.89[AFR][1000 genomes]
rs11234647	0.97[AFR][1000 genomes]
rs11234648	0.92[AFR][1000 genomes]
rs11824889	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11828146	0.82[AFR][1000 genomes]
rs11828283	0.91[AFR][1000 genomes]
rs12270471	0.92[AFR][1000 genomes]
rs12270761	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12270790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12272259	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12272318	0.89[AFR][1000 genomes]
rs12273667	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12276248	0.82[AFR][1000 genomes]
rs12277432	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12278247	0.82[AFR][1000 genomes]
rs12280555	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12280833	0.97[AFR][1000 genomes]
rs12283035	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12285249	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12288560	0.94[AFR][1000 genomes]
rs12289817	0.82[AFR][1000 genomes]
rs12291532	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12292316	0.91[AFR][1000 genomes]
rs12293159	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12293545	0.91[AFR][1000 genomes]
rs12294756	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1452136	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17149063	0.99[AFR][1000 genomes]
rs17149064	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2242142	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3741002	0.82[AFR][1000 genomes]
rs3741003	0.82[AFR][1000 genomes]
rs3781813	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122296	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122406	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7129977	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7932664	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7948566	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86108600-86138600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:86117800-86142200	Weak transcription	Fetal Stomach	stomach
3	chr11:86118200-86151000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:86118400-86142800	Weak transcription	Left Ventricle	heart
5	chr11:86119600-86142200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:86124600-86142200	Weak transcription	Aorta	Aorta
7	chr11:86131400-86142400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:86132200-86142200	Weak transcription	Spleen	Spleen
9	chr11:86136200-86143600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:86136200-86145000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:86136800-86170200	Weak transcription	Fetal Heart	heart
12	chr11:86137000-86142200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links