Variant report

Variant	rs7932664
Chromosome Location	chr11:86130785-86130786
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10466700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466729	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10466730	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898503	1.00[CHD][hapmap]
rs11234643	0.86[ASW][hapmap];1.00[CHD][hapmap];0.94[LWK][hapmap];0.85[MKK][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes]
rs11234647	1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11234648	1.00[JPT][hapmap];0.91[LWK][hapmap];0.97[MKK][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11824889	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828146	1.00[ASN][1000 genomes]
rs11828283	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12270471	1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12270570	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12270761	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270790	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272259	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12272318	0.89[AFR][1000 genomes]
rs12273667	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12276248	1.00[ASN][1000 genomes]
rs12277432	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278247	1.00[ASN][1000 genomes]
rs12280555	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280833	1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12281645	1.00[ASN][1000 genomes]
rs12283035	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12285249	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288560	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12289817	1.00[ASN][1000 genomes]
rs12291532	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12292316	1.00[JPT][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12293159	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293545	1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12294756	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12804130	1.00[ASN][1000 genomes]
rs12804407	1.00[ASN][1000 genomes]
rs12805940	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs1452136	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452137	1.00[ASN][1000 genomes]
rs1458381	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17149063	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17149064	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17819176	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs2242142	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2279047	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs34416639	1.00[ASN][1000 genomes]
rs34939684	1.00[ASN][1000 genomes]
rs35686713	1.00[ASN][1000 genomes]
rs3741001	1.00[ASN][1000 genomes]
rs3741002	0.86[ASN][1000 genomes]
rs3741003	1.00[ASN][1000 genomes]
rs3781806	1.00[ASN][1000 genomes]
rs3781813	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3824953	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs56009909	1.00[ASN][1000 genomes]
rs58228993	1.00[ASN][1000 genomes]
rs58354189	1.00[ASN][1000 genomes]
rs66833360	1.00[ASN][1000 genomes]
rs66872826	1.00[ASN][1000 genomes]
rs7107941	1.00[ASN][1000 genomes]
rs7108053	0.85[JPT][hapmap]
rs7122296	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122406	1.00[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129977	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72953614	1.00[ASN][1000 genomes]
rs7948566	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948764	1.00[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86106600-86134600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:86108600-86138600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:86117800-86142200	Weak transcription	Fetal Stomach	stomach
4	chr11:86118200-86151000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:86118400-86131000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:86118400-86142800	Weak transcription	Left Ventricle	heart
7	chr11:86119400-86135000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:86119600-86142200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:86122600-86133400	Weak transcription	Ovary	ovary
10	chr11:86123600-86136800	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:86124600-86142200	Weak transcription	Aorta	Aorta
12	chr11:86124800-86136600	Weak transcription	Brain Anterior Caudate	brain
13	chr11:86127800-86133200	Weak transcription	K562	blood
14	chr11:86128200-86133200	Weak transcription	Fetal Intestine Large	intestine
15	chr11:86130000-86131600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:86130200-86131400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:86130400-86131000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:86130400-86134600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:86130600-86131000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:86130600-86131000	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links