Variant report

Variant	rs12804407
Chromosome Location	chr11:86255363-86255364
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10466700	1.00[ASN][1000 genomes]
rs10466729	1.00[ASN][1000 genomes]
rs10466730	1.00[ASN][1000 genomes]
rs11234647	1.00[ASN][1000 genomes]
rs11234648	1.00[ASN][1000 genomes]
rs11824889	1.00[ASN][1000 genomes]
rs11828146	1.00[ASN][1000 genomes]
rs11828283	1.00[ASN][1000 genomes]
rs12270471	1.00[ASN][1000 genomes]
rs12270761	1.00[ASN][1000 genomes]
rs12270790	1.00[ASN][1000 genomes]
rs12272259	0.83[ASN][1000 genomes]
rs12276248	1.00[ASN][1000 genomes]
rs12277432	1.00[ASN][1000 genomes]
rs12278247	1.00[ASN][1000 genomes]
rs12280555	1.00[ASN][1000 genomes]
rs12280833	1.00[ASN][1000 genomes]
rs12281645	1.00[ASN][1000 genomes]
rs12283035	1.00[ASN][1000 genomes]
rs12285249	1.00[ASN][1000 genomes]
rs12288560	1.00[ASN][1000 genomes]
rs12289817	1.00[ASN][1000 genomes]
rs12291532	1.00[ASN][1000 genomes]
rs12292316	1.00[ASN][1000 genomes]
rs12293159	1.00[ASN][1000 genomes]
rs12293545	1.00[ASN][1000 genomes]
rs12294756	1.00[ASN][1000 genomes]
rs12804130	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12805940	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452136	1.00[ASN][1000 genomes]
rs1452137	1.00[ASN][1000 genomes]
rs1458381	1.00[ASN][1000 genomes]
rs17149063	1.00[ASN][1000 genomes]
rs17819176	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2242142	1.00[ASN][1000 genomes]
rs2279047	1.00[ASN][1000 genomes]
rs34095490	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34416639	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34939684	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35686713	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3741001	1.00[ASN][1000 genomes]
rs3741002	0.86[ASN][1000 genomes]
rs3741003	1.00[ASN][1000 genomes]
rs3781806	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781813	1.00[ASN][1000 genomes]
rs3824953	1.00[ASN][1000 genomes]
rs56009909	1.00[ASN][1000 genomes]
rs58228993	1.00[ASN][1000 genomes]
rs58354189	1.00[ASN][1000 genomes]
rs66833360	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66872826	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67389098	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7107941	1.00[ASN][1000 genomes]
rs7122296	1.00[ASN][1000 genomes]
rs7122406	1.00[ASN][1000 genomes]
rs7129977	1.00[ASN][1000 genomes]
rs72953614	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932664	1.00[ASN][1000 genomes]
rs7948566	1.00[ASN][1000 genomes]
rs7948764	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv528182	chr11:86234604-86259006	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86231800-86259000	Weak transcription	Left Ventricle	heart
2	chr11:86236000-86259000	Weak transcription	Ovary	ovary
3	chr11:86236200-86258600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:86237800-86262200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:86238000-86258800	Weak transcription	Fetal Stomach	stomach
6	chr11:86241800-86259000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:86244800-86258800	Weak transcription	Adipose Nuclei	Adipose
8	chr11:86244800-86258800	Weak transcription	Brain Angular Gyrus	brain
9	chr11:86245600-86258800	Weak transcription	Aorta	Aorta
10	chr11:86248800-86258800	Weak transcription	Fetal Brain Male	brain
11	chr11:86249800-86261800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:86250400-86261600	Weak transcription	Gastric	stomach
13	chr11:86251200-86261600	Weak transcription	Right Ventricle	heart
14	chr11:86253000-86259000	Weak transcription	Lung	lung

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