Variant report

Variant	rs12288560
Chromosome Location	chr11:86128847-86128848
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10466700	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10466729	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466730	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11234643	0.85[AFR][1000 genomes]
rs11234647	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234648	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824889	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11825033	0.82[EUR][1000 genomes]
rs11828146	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828283	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12269969	0.82[EUR][1000 genomes]
rs12270471	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12270570	0.94[AFR][1000 genomes]
rs12270761	1.00[ASN][1000 genomes]
rs12270790	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12272259	0.83[ASN][1000 genomes]
rs12272318	0.88[AFR][1000 genomes]
rs12276248	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277432	1.00[ASN][1000 genomes]
rs12278247	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280555	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12280833	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281645	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283035	1.00[ASN][1000 genomes]
rs12285249	1.00[ASN][1000 genomes]
rs12289817	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291532	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12292316	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293159	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12293545	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294756	1.00[ASN][1000 genomes]
rs12804130	1.00[ASN][1000 genomes]
rs12804407	1.00[ASN][1000 genomes]
rs12805940	1.00[ASN][1000 genomes]
rs1452136	1.00[ASN][1000 genomes]
rs1452137	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1458381	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17149063	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17149064	0.93[AFR][1000 genomes]
rs17819176	1.00[ASN][1000 genomes]
rs2242142	1.00[ASN][1000 genomes]
rs2279047	1.00[ASN][1000 genomes]
rs34416639	1.00[ASN][1000 genomes]
rs34939684	1.00[ASN][1000 genomes]
rs35686713	1.00[ASN][1000 genomes]
rs3741001	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3741002	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3741003	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781806	1.00[ASN][1000 genomes]
rs3781813	1.00[ASN][1000 genomes]
rs3824953	1.00[ASN][1000 genomes]
rs56009909	1.00[ASN][1000 genomes]
rs58228993	1.00[ASN][1000 genomes]
rs58354189	1.00[ASN][1000 genomes]
rs66833360	1.00[ASN][1000 genomes]
rs66872826	1.00[ASN][1000 genomes]
rs7107941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122296	1.00[ASN][1000 genomes]
rs7122406	1.00[ASN][1000 genomes]
rs7129977	1.00[ASN][1000 genomes]
rs72953614	1.00[ASN][1000 genomes]
rs7932664	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7948566	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7948764	1.00[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86106600-86134600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:86108600-86138600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:86117800-86142200	Weak transcription	Fetal Stomach	stomach
4	chr11:86118200-86130400	Weak transcription	Brain Substantia Nigra	brain
5	chr11:86118200-86151000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr11:86118400-86131000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:86118400-86142800	Weak transcription	Left Ventricle	heart
8	chr11:86119400-86135000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:86119600-86142200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:86122600-86133400	Weak transcription	Ovary	ovary
11	chr11:86123600-86136800	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:86124600-86142200	Weak transcription	Aorta	Aorta
13	chr11:86124800-86136600	Weak transcription	Brain Anterior Caudate	brain
14	chr11:86126200-86130000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:86127800-86129000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr11:86127800-86133200	Weak transcription	K562	blood
17	chr11:86128000-86130200	Weak transcription	NHDF-Ad	bronchial
18	chr11:86128200-86129800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:86128200-86130200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:86128200-86133200	Weak transcription	Fetal Intestine Large	intestine
21	chr11:86128400-86130400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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