Variant report

Variant	rs11825033
Chromosome Location	chr11:86165659-86165660
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86165495..86167878-chr11:86266316..86268174,2	MCF-7	breast:
2	chr11:86160987..86162784-chr11:86164808..86167702,2	MCF-7	breast:
3	chr11:86165050..86167177-chr11:86200288..86202010,2	K562	blood:
4	chr11:86107626..86109669-chr11:86164966..86167239,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10466729	0.82[EUR][1000 genomes]
rs11234647	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs11234648	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs11826066	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs11828146	0.82[EUR][1000 genomes]
rs12269969	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12270471	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs12276248	0.82[EUR][1000 genomes]
rs12278188	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12278247	0.82[EUR][1000 genomes]
rs12280833	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs12281645	0.82[EUR][1000 genomes]
rs12288560	0.82[EUR][1000 genomes]
rs12289817	0.82[EUR][1000 genomes]
rs12292316	0.82[CEU][hapmap]
rs12293545	0.82[CEU][hapmap]
rs1452137	0.82[EUR][1000 genomes]
rs1458381	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs17149063	0.82[EUR][1000 genomes]
rs2078385	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs3741001	0.82[EUR][1000 genomes]
rs3741002	0.82[EUR][1000 genomes]
rs3741003	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs7107941	0.82[EUR][1000 genomes]
rs751911	0.82[CEU][hapmap]
rs7936577	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7952019	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86136800-86170200	Weak transcription	Fetal Heart	heart
2	chr11:86138600-86167400	Weak transcription	Fetal Lung	lung
3	chr11:86142000-86167400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:86145400-86167400	Weak transcription	Pancreas	Pancrea
5	chr11:86150200-86167400	Weak transcription	Stomach Mucosa	stomach
6	chr11:86151800-86167400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:86151800-86167400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:86152400-86172200	Weak transcription	Fetal Brain Male	brain
9	chr11:86153200-86187000	Weak transcription	Fetal Kidney	kidney
10	chr11:86154000-86166800	Weak transcription	A549	lung
11	chr11:86154000-86167400	Weak transcription	NH-A	brain
12	chr11:86154000-86169600	Weak transcription	HSMM	muscle
13	chr11:86154000-86170800	Weak transcription	Esophagus	oesophagus
14	chr11:86154200-86167000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:86154600-86167400	Weak transcription	Hela-S3	cervix
16	chr11:86154600-86170600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:86154800-86171000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr11:86155000-86167400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:86156400-86167400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr11:86156600-86167400	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:86156800-86169400	Weak transcription	Osteobl	bone
22	chr11:86157000-86167400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:86157000-86179800	Weak transcription	Fetal Intestine Large	intestine
24	chr11:86157400-86170800	Weak transcription	Psoas Muscle	Psoas
25	chr11:86157800-86166400	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:86158000-86170800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr11:86158200-86167600	Weak transcription	Spleen	Spleen
28	chr11:86158600-86167400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:86158600-86167400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:86158600-86167400	Weak transcription	Fetal Muscle Leg	muscle
31	chr11:86158600-86167400	Weak transcription	Left Ventricle	heart
32	chr11:86158600-86167400	Weak transcription	Ovary	ovary
33	chr11:86158600-86167400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr11:86158600-86169000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:86158600-86169600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:86158600-86170400	Weak transcription	Brain Anterior Caudate	brain
37	chr11:86158600-86170800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr11:86158600-86170800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:86158600-86171000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr11:86158600-86171000	Weak transcription	Gastric	stomach
41	chr11:86158600-86187200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr11:86158800-86167400	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr11:86158800-86168200	Weak transcription	Aorta	Aorta
44	chr11:86159200-86170800	Weak transcription	Fetal Intestine Small	intestine
45	chr11:86159400-86167400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:86159400-86167400	Weak transcription	Right Ventricle	heart
47	chr11:86159600-86167400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr11:86159600-86170800	Weak transcription	Lung	lung
49	chr11:86159600-86196800	Weak transcription	Primary hematopoietic stem cells	blood
50	chr11:86159800-86166800	Weak transcription	Fetal Stomach	stomach

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