Variant report

Variant	rs3741002
Chromosome Location	chr11:86143047-86143048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10466700	0.86[ASN][1000 genomes]
rs10466729	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10466730	0.86[ASN][1000 genomes]
rs11234647	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11234648	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11824889	0.86[ASN][1000 genomes]
rs11825033	0.82[EUR][1000 genomes]
rs11828146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11828283	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12269969	0.82[EUR][1000 genomes]
rs12270471	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12270570	0.82[AFR][1000 genomes]
rs12270761	0.93[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12270790	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12273667	0.87[AFR][1000 genomes]
rs12276248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12277432	0.90[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12278247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12280555	0.86[ASN][1000 genomes]
rs12280833	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12281645	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12283035	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12285249	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12288560	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12289817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12291532	0.96[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12292316	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12293159	0.99[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12293545	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12294756	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12804130	0.86[ASN][1000 genomes]
rs12804407	0.86[ASN][1000 genomes]
rs12805940	0.86[ASN][1000 genomes]
rs1452136	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1452137	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1458381	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17149063	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17149064	0.81[AFR][1000 genomes]
rs17819176	0.86[ASN][1000 genomes]
rs2242142	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2279047	0.86[ASN][1000 genomes]
rs34416639	0.86[ASN][1000 genomes]
rs34939684	0.86[ASN][1000 genomes]
rs35686713	0.86[ASN][1000 genomes]
rs3741001	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3741003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3781806	0.86[ASN][1000 genomes]
rs3781813	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs3824953	0.86[ASN][1000 genomes]
rs56009909	0.86[ASN][1000 genomes]
rs58228993	0.86[ASN][1000 genomes]
rs58354189	0.86[ASN][1000 genomes]
rs66833360	0.86[ASN][1000 genomes]
rs66872826	0.86[ASN][1000 genomes]
rs7107941	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7122296	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7122406	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7129977	0.86[ASN][1000 genomes]
rs72953614	0.86[ASN][1000 genomes]
rs7932664	0.86[ASN][1000 genomes]
rs7948566	0.86[ASN][1000 genomes]
rs7948764	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86118200-86151000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr11:86136200-86143600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:86136200-86145000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:86136800-86170200	Weak transcription	Fetal Heart	heart
5	chr11:86138600-86167400	Weak transcription	Fetal Lung	lung
6	chr11:86140800-86153400	Weak transcription	Right Ventricle	heart
7	chr11:86140800-86155800	Weak transcription	Psoas Muscle	Psoas
8	chr11:86141000-86153400	Weak transcription	Brain Anterior Caudate	brain
9	chr11:86141200-86149800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:86141400-86149600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:86142000-86143600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
12	chr11:86142000-86144200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:86142000-86151400	Weak transcription	Adipose Nuclei	Adipose
14	chr11:86142000-86153600	Weak transcription	Brain Angular Gyrus	brain
15	chr11:86142000-86167400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr11:86142200-86143600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:86142400-86144000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:86142400-86144400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:86142400-86151200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:86142600-86143800	ZNF genes & repeats	Fetal Brain Female	brain
21	chr11:86142600-86151200	Weak transcription	Fetal Stomach	stomach
22	chr11:86142600-86153400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:86142600-86155000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:86142600-86156000	Weak transcription	Spleen	Spleen
25	chr11:86142800-86143200	Weak transcription	Ovary	ovary
26	chr11:86142800-86143600	Strong transcription	Left Ventricle	heart
27	chr11:86142800-86144600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:86142800-86146600	Weak transcription	Aorta	Aorta
29	chr11:86142800-86151000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr11:86142800-86152000	Weak transcription	Brain Germinal Matrix	brain
31	chr11:86142800-86157600	Weak transcription	Gastric	stomach
32	chr11:86143000-86143400	Enhancers	Thymus	Thymus
33	chr11:86143000-86153400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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