Variant report

Variant	rs12805940
Chromosome Location	chr11:86250128-86250129
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10466700	1.00[ASN][1000 genomes]
rs10466729	1.00[ASN][1000 genomes]
rs10466730	1.00[ASN][1000 genomes]
rs10501622	0.85[CEU][hapmap]
rs10898496	0.84[JPT][hapmap]
rs11234647	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs11234648	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs11824889	1.00[ASN][1000 genomes]
rs11828146	1.00[ASN][1000 genomes]
rs11828283	1.00[ASN][1000 genomes]
rs12270471	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs12270761	1.00[ASN][1000 genomes]
rs12270790	0.82[JPT][hapmap];1.00[ASN][1000 genomes]
rs12272259	0.83[ASN][1000 genomes]
rs12276248	1.00[ASN][1000 genomes]
rs12277432	1.00[ASN][1000 genomes]
rs12278247	1.00[ASN][1000 genomes]
rs12280555	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs12280833	0.84[JPT][hapmap];1.00[ASN][1000 genomes]
rs12281645	1.00[ASN][1000 genomes]
rs12283035	1.00[ASN][1000 genomes]
rs12285249	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs12288560	1.00[ASN][1000 genomes]
rs12289817	1.00[ASN][1000 genomes]
rs12291532	1.00[ASN][1000 genomes]
rs12292316	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs12293159	1.00[ASN][1000 genomes]
rs12293545	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs12294756	1.00[ASN][1000 genomes]
rs12799562	0.85[CEU][hapmap]
rs12804130	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12804407	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452136	1.00[ASN][1000 genomes]
rs1452137	1.00[ASN][1000 genomes]
rs1458381	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs17149063	1.00[ASN][1000 genomes]
rs17149064	0.85[JPT][hapmap]
rs17819176	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2242142	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs2279047	1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[ASN][1000 genomes]
rs34095490	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34416639	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34939684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35686713	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3741001	1.00[ASN][1000 genomes]
rs3741002	0.86[ASN][1000 genomes]
rs3741003	1.00[ASN][1000 genomes]
rs3781806	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781813	1.00[ASN][1000 genomes]
rs3824953	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs56009909	1.00[ASN][1000 genomes]
rs58228993	1.00[ASN][1000 genomes]
rs58354189	1.00[ASN][1000 genomes]
rs66833360	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66872826	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67389098	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7107941	1.00[ASN][1000 genomes]
rs7122296	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs7122406	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs7129977	1.00[ASN][1000 genomes]
rs72953614	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7932664	0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs7948566	1.00[ASN][1000 genomes]
rs7948764	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv528182	chr11:86234604-86259006	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86231800-86259000	Weak transcription	Left Ventricle	heart
2	chr11:86232200-86250600	Weak transcription	Right Ventricle	heart
3	chr11:86236000-86259000	Weak transcription	Ovary	ovary
4	chr11:86236200-86258600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:86237800-86262200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:86238000-86258800	Weak transcription	Fetal Stomach	stomach
7	chr11:86241800-86259000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:86244800-86258800	Weak transcription	Adipose Nuclei	Adipose
9	chr11:86244800-86258800	Weak transcription	Brain Angular Gyrus	brain
10	chr11:86245600-86258800	Weak transcription	Aorta	Aorta
11	chr11:86246800-86251200	Weak transcription	Psoas Muscle	Psoas
12	chr11:86248200-86250800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:86248400-86253600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr11:86248800-86258800	Weak transcription	Fetal Brain Male	brain
15	chr11:86249800-86261800	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links