Variant report

Variant	rs12799562
Chromosome Location	chr11:86248984-86248985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1006586	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[ASN][1000 genomes]
rs1006587	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[ASN][1000 genomes]
rs10444371	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10444372	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10444373	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10444374	0.82[AFR][1000 genomes]
rs10501622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898488	1.00[ASN][1000 genomes]
rs10898495	1.00[ASN][1000 genomes]
rs11234643	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs11234668	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs12361416	0.94[ASN][1000 genomes]
rs12362900	1.00[ASN][1000 genomes]
rs12420965	1.00[CHB][hapmap]
rs12421147	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12791972	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12792300	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12793707	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12799435	0.86[AMR][1000 genomes]
rs12805940	0.85[CEU][hapmap]
rs12808738	0.83[ASN][1000 genomes]
rs17149169	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17819176	0.85[CEU][hapmap]
rs28895937	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34405620	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35042210	1.00[ASN][1000 genomes]
rs3758878	1.00[CHB][hapmap]
rs3824952	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs628449	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[YRI][hapmap]
rs7112309	1.00[CHB][hapmap]
rs72953626	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926965	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7944836	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap];1.00[ASN][1000 genomes]
rs7948764	0.96[AFR][1000 genomes]
rs9645703	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv528182	chr11:86234604-86259006	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86231800-86259000	Weak transcription	Left Ventricle	heart
2	chr11:86232200-86250600	Weak transcription	Right Ventricle	heart
3	chr11:86236000-86259000	Weak transcription	Ovary	ovary
4	chr11:86236200-86258600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:86237800-86262200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:86238000-86258800	Weak transcription	Fetal Stomach	stomach
7	chr11:86241800-86259000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:86244800-86258800	Weak transcription	Adipose Nuclei	Adipose
9	chr11:86244800-86258800	Weak transcription	Brain Angular Gyrus	brain
10	chr11:86245600-86258800	Weak transcription	Aorta	Aorta
11	chr11:86246800-86251200	Weak transcription	Psoas Muscle	Psoas
12	chr11:86248200-86250800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:86248400-86253600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr11:86248800-86249200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:86248800-86249200	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr11:86248800-86249400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:86248800-86258800	Weak transcription	Fetal Brain Male	brain

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