Variant report

Variant	rs7944836
Chromosome Location	chr11:86230924-86230925
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86227984..86231236-chr11:86233662..86235563,3	MCF-7	breast:
2	chr11:86209488..86213127-chr11:86228780..86231761,3	K562	blood:
3	chr11:86213664..86215270-chr11:86230808..86233589,2	MCF-7	breast:
4	chr11:86224834..86227420-chr11:86229553..86231855,2	K562	blood:
5	chr11:86225920..86228246-chr11:86229553..86231799,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1006586	0.85[ASW][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.83[LWK][hapmap];0.93[MKK][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1006587	0.85[ASW][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.83[LWK][hapmap];0.93[MKK][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10444371	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs10444372	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs10444373	1.00[ASN][1000 genomes]
rs10501622	0.85[ASW][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.92[LWK][hapmap];0.87[YRI][hapmap];1.00[ASN][1000 genomes]
rs10898488	1.00[ASN][1000 genomes]
rs10898495	1.00[ASN][1000 genomes]
rs11234643	1.00[CHB][hapmap]
rs11234668	0.84[ASW][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[LWK][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12361416	0.94[ASN][1000 genomes]
rs12362900	1.00[ASN][1000 genomes]
rs12420965	1.00[CHB][hapmap]
rs12421147	1.00[ASN][1000 genomes]
rs12791972	0.83[ASN][1000 genomes]
rs12792300	0.94[ASN][1000 genomes]
rs12793707	1.00[ASN][1000 genomes]
rs12799562	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap];1.00[ASN][1000 genomes]
rs12808738	0.83[ASN][1000 genomes]
rs17149169	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[ASN][1000 genomes]
rs28895937	1.00[ASN][1000 genomes]
rs34405620	1.00[ASN][1000 genomes]
rs35042210	1.00[ASN][1000 genomes]
rs3758877	1.00[CHB][hapmap]
rs3758878	1.00[CHB][hapmap]
rs3824952	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[EUR][1000 genomes]
rs628449	1.00[CHB][hapmap]
rs7112309	1.00[CHB][hapmap]
rs72953626	1.00[ASN][1000 genomes]
rs7926965	1.00[CEU][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9645703	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86223000-86238200	Weak transcription	Pancreas	Pancrea
2	chr11:86223800-86236800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:86223800-86237000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:86224800-86232400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:86225400-86231000	Enhancers	NHEK	skin
6	chr11:86225400-86233200	Enhancers	HUVEC	blood vessel
7	chr11:86225800-86231400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:86226200-86231600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:86226400-86231400	Enhancers	Osteobl	bone
10	chr11:86227000-86234800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:86227000-86235000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr11:86227000-86235600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr11:86227800-86231800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:86228000-86231000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:86228000-86232000	Enhancers	Hela-S3	cervix
16	chr11:86228200-86231000	Enhancers	Fetal Intestine Large	intestine
17	chr11:86228600-86231200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr11:86229200-86231000	Enhancers	Fetal Kidney	kidney
19	chr11:86229200-86231400	Enhancers	Fetal Muscle Leg	muscle
20	chr11:86229200-86231800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr11:86229200-86232000	Enhancers	Fetal Lung	lung
22	chr11:86229400-86231400	Enhancers	Fetal Brain Female	brain
23	chr11:86229400-86231400	Enhancers	Fetal Stomach	stomach
24	chr11:86229400-86231800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:86229400-86231800	Enhancers	Fetal Brain Male	brain
26	chr11:86229400-86232200	Enhancers	Fetal Heart	heart
27	chr11:86229600-86231000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:86229600-86231000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:86229600-86231000	Enhancers	Placenta	Placenta
30	chr11:86229600-86231000	Enhancers	HMEC	breast
31	chr11:86229600-86231000	Enhancers	HSMMtube	muscle
32	chr11:86229600-86231200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:86229600-86231200	Enhancers	Muscle Satellite Cultured Cells	--
34	chr11:86229600-86231200	Enhancers	Small Intestine	intestine
35	chr11:86229600-86231400	Enhancers	NH-A	brain
36	chr11:86229600-86231400	Enhancers	NHDF-Ad	bronchial
37	chr11:86229600-86231600	Enhancers	Brain Germinal Matrix	brain
38	chr11:86229600-86232200	Enhancers	Right Ventricle	heart
39	chr11:86229800-86231000	Enhancers	Brain Anterior Caudate	brain
40	chr11:86229800-86231000	Enhancers	Brain Hippocampus Middle	brain
41	chr11:86229800-86231000	Flanking Active TSS	K562	blood
42	chr11:86229800-86231400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:86229800-86231400	Enhancers	Brain Angular Gyrus	brain
44	chr11:86229800-86231400	Enhancers	NHLF	lung
45	chr11:86229800-86231600	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr11:86229800-86231600	Enhancers	Ovary	ovary
47	chr11:86229800-86231800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:86229800-86231800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr11:86229800-86231800	Enhancers	Placenta Amnion	Placenta Amnion
50	chr11:86229800-86231800	Enhancers	Skeletal Muscle Female	skeletal muscle

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