Variant report

Variant	rs3824952
Chromosome Location	chr11:86176041-86176042
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86174300..86177021-chr11:86280840..86283667,2	MCF-7	breast:
2	chr11:86175990..86178793-chr11:86191852..86194276,2	MCF-7	breast:
3	chr11:86171384..86173382-chr11:86174243..86177656,3	MCF-7	breast:
4	chr11:86175072..86177234-chr11:86208883..86211616,2	MCF-7	breast:
5	chr11:86176037..86178777-chr11:86179586..86181565,2	MCF-7	breast:
6	chr11:86174332..86177308-chr11:86177532..86180145,2	K562	blood:
7	chr11:86174318..86177254-chr11:86179008..86180936,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151376	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1006586	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1006587	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10444371	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10444372	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10501622	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs11234643	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs11234668	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12420965	1.00[CHB][hapmap]
rs12799562	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs17149169	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs3758878	1.00[CHB][hapmap]
rs628449	1.00[CHB][hapmap]
rs7112309	1.00[CHB][hapmap]
rs7926965	1.00[CEU][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes]
rs7944836	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[EUR][1000 genomes]
rs9645703	1.00[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86153200-86187000	Weak transcription	Fetal Kidney	kidney
2	chr11:86157000-86179800	Weak transcription	Fetal Intestine Large	intestine
3	chr11:86158600-86187200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:86159600-86196800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:86160200-86221000	Weak transcription	Primary T cells from cord blood	blood
6	chr11:86169800-86176200	Enhancers	NHEK	skin
7	chr11:86169800-86178400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:86170200-86187200	Weak transcription	Stomach Mucosa	stomach
9	chr11:86171200-86197800	Weak transcription	Esophagus	oesophagus
10	chr11:86171600-86180400	Weak transcription	Gastric	stomach
11	chr11:86171800-86187200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:86171800-86188800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:86172000-86176800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:86172000-86180600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:86172200-86177400	Weak transcription	NHLF	lung
16	chr11:86172200-86180600	Weak transcription	Osteobl	bone
17	chr11:86172200-86181000	Weak transcription	NHDF-Ad	bronchial
18	chr11:86172200-86184800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:86172200-86208200	Weak transcription	Pancreas	Pancrea
20	chr11:86172400-86179000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:86172400-86183400	Weak transcription	Fetal Heart	heart
22	chr11:86172400-86192800	Weak transcription	Brain Anterior Caudate	brain
23	chr11:86172400-86208400	Weak transcription	Brain Angular Gyrus	brain
24	chr11:86172400-86227000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:86172600-86180400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:86172600-86180600	Weak transcription	Fetal Lung	lung
27	chr11:86172600-86180800	Weak transcription	Right Ventricle	heart
28	chr11:86172600-86184600	Weak transcription	HSMM	muscle
29	chr11:86172600-86187200	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr11:86172600-86194800	Weak transcription	Brain Hippocampus Middle	brain
31	chr11:86172800-86179000	Weak transcription	Right Atrium	heart
32	chr11:86172800-86180400	Weak transcription	Fetal Muscle Leg	muscle
33	chr11:86172800-86180800	Weak transcription	Spleen	Spleen
34	chr11:86172800-86184800	Weak transcription	HUVEC	blood vessel
35	chr11:86172800-86188800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:86173200-86176200	Strong transcription	Ovary	ovary
37	chr11:86173400-86176600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:86173400-86178200	Enhancers	HMEC	breast
39	chr11:86173600-86176400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:86173600-86180600	Weak transcription	Small Intestine	intestine
41	chr11:86173800-86176200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:86173800-86180200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:86174200-86176200	Strong transcription	Fetal Brain Female	brain
44	chr11:86174600-86176200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:86174600-86177600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr11:86174600-86180600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr11:86174600-86181000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr11:86174600-86185000	Weak transcription	Lung	lung
49	chr11:86174600-86187200	Weak transcription	Fetal Intestine Small	intestine
50	chr11:86174600-86187200	Weak transcription	Fetal Stomach	stomach

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