Variant report

Variant	rs17149169
Chromosome Location	chr11:86261616-86261617
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1006586	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1006587	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10444371	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10444372	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10444373	1.00[ASN][1000 genomes]
rs10501622	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10898488	1.00[ASN][1000 genomes]
rs10898495	1.00[ASN][1000 genomes]
rs11234643	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs11234668	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12361416	0.94[ASN][1000 genomes]
rs12362900	1.00[ASN][1000 genomes]
rs12420965	1.00[CHB][hapmap]
rs12421147	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12791972	0.83[ASN][1000 genomes]
rs12792300	0.94[ASN][1000 genomes]
rs12793707	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12799562	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12808738	0.83[ASN][1000 genomes]
rs28895937	1.00[ASN][1000 genomes]
rs34405620	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35042210	1.00[ASN][1000 genomes]
rs3758877	1.00[CHB][hapmap]
rs3758878	1.00[CHB][hapmap]
rs3824952	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs628449	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs7112309	1.00[CHB][hapmap]
rs72953626	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7926965	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7944836	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[ASN][1000 genomes]
rs9645703	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86237800-86262200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:86249800-86261800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:86256600-86262400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:86257800-86262200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:86258800-86262200	Enhancers	HUVEC	blood vessel
6	chr11:86258800-86263400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr11:86258800-86263400	Enhancers	Fetal Brain Male	brain
8	chr11:86258800-86263400	Enhancers	Psoas Muscle	Psoas
9	chr11:86258800-86264600	Enhancers	Right Atrium	heart
10	chr11:86259000-86263200	Weak transcription	Brain Germinal Matrix	brain
11	chr11:86259200-86262200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:86259200-86262200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:86259200-86262400	Weak transcription	Ovary	ovary
14	chr11:86259200-86264400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr11:86259400-86262200	Weak transcription	A549	lung
16	chr11:86259400-86262600	Weak transcription	Fetal Heart	heart
17	chr11:86259600-86262200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:86259600-86262200	Weak transcription	HSMM	muscle
19	chr11:86259600-86262600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:86259600-86263000	Weak transcription	Fetal Thymus	thymus
21	chr11:86259600-86269800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:86259600-86270400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr11:86259600-86270800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr11:86259800-86270800	Weak transcription	Brain Hippocampus Middle	brain
25	chr11:86260000-86261800	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:86260000-86262000	Weak transcription	Stomach Mucosa	stomach
27	chr11:86260000-86262200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:86260000-86262200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr11:86260000-86262200	Weak transcription	HMEC	breast
30	chr11:86260000-86262200	Weak transcription	HSMMtube	muscle
31	chr11:86260000-86262400	Weak transcription	Fetal Lung	lung
32	chr11:86260000-86262600	Weak transcription	Colonic Mucosa	Colon
33	chr11:86260000-86262800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr11:86260000-86263400	Weak transcription	Fetal Stomach	stomach
35	chr11:86260000-86264000	Enhancers	Fetal Intestine Small	intestine
36	chr11:86260000-86266200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr11:86260000-86268800	Weak transcription	Fetal Kidney	kidney
38	chr11:86260000-86270200	Weak transcription	Brain Angular Gyrus	brain
39	chr11:86260000-86270200	Weak transcription	Brain Substantia Nigra	brain
40	chr11:86260200-86262000	Weak transcription	Adipose Nuclei	Adipose
41	chr11:86260200-86262400	Weak transcription	NHEK	skin
42	chr11:86260200-86264000	Weak transcription	Brain Anterior Caudate	brain
43	chr11:86260400-86262200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:86260400-86262400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr11:86260400-86262600	Weak transcription	Aorta	Aorta
46	chr11:86260400-86263400	Enhancers	Colon Smooth Muscle	Colon
47	chr11:86260400-86264200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr11:86260600-86262200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:86260800-86262000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:86260800-86262200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links