Variant report

Variant	rs7926965
Chromosome Location	chr11:86231339-86231340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86209488..86213127-chr11:86228780..86231761,3	K562	blood:
2	chr11:86213664..86215270-chr11:86230808..86233589,2	MCF-7	breast:
3	chr11:86224834..86227420-chr11:86229553..86231855,2	K562	blood:
4	chr11:86225920..86228246-chr11:86229553..86231799,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1006586	1.00[JPT][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1006587	1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10444371	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10444372	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10444373	1.00[ASN][1000 genomes]
rs10501622	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10898488	1.00[ASN][1000 genomes]
rs10898495	1.00[ASN][1000 genomes]
rs11234668	1.00[JPT][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12361416	0.94[ASN][1000 genomes]
rs12362900	1.00[ASN][1000 genomes]
rs12421147	1.00[ASN][1000 genomes]
rs12791972	0.83[ASN][1000 genomes]
rs12792300	0.94[ASN][1000 genomes]
rs12793707	1.00[ASN][1000 genomes]
rs12799562	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12808738	0.83[ASN][1000 genomes]
rs17149169	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28895937	1.00[ASN][1000 genomes]
rs34405620	1.00[ASN][1000 genomes]
rs35042210	1.00[ASN][1000 genomes]
rs3824952	1.00[CEU][hapmap];0.89[JPT][hapmap];0.90[EUR][1000 genomes]
rs72953626	1.00[ASN][1000 genomes]
rs7944836	1.00[CEU][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9645703	1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86223000-86238200	Weak transcription	Pancreas	Pancrea
2	chr11:86223800-86236800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:86223800-86237000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:86224800-86232400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:86225400-86233200	Enhancers	HUVEC	blood vessel
6	chr11:86225800-86231400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:86226200-86231600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:86226400-86231400	Enhancers	Osteobl	bone
9	chr11:86227000-86234800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:86227000-86235000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:86227000-86235600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr11:86227800-86231800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:86228000-86232000	Enhancers	Hela-S3	cervix
14	chr11:86229200-86231400	Enhancers	Fetal Muscle Leg	muscle
15	chr11:86229200-86231800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr11:86229200-86232000	Enhancers	Fetal Lung	lung
17	chr11:86229400-86231400	Enhancers	Fetal Brain Female	brain
18	chr11:86229400-86231400	Enhancers	Fetal Stomach	stomach
19	chr11:86229400-86231800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:86229400-86231800	Enhancers	Fetal Brain Male	brain
21	chr11:86229400-86232200	Enhancers	Fetal Heart	heart
22	chr11:86229600-86231400	Enhancers	NH-A	brain
23	chr11:86229600-86231400	Enhancers	NHDF-Ad	bronchial
24	chr11:86229600-86231600	Enhancers	Brain Germinal Matrix	brain
25	chr11:86229600-86232200	Enhancers	Right Ventricle	heart
26	chr11:86229800-86231400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:86229800-86231400	Enhancers	Brain Angular Gyrus	brain
28	chr11:86229800-86231400	Enhancers	NHLF	lung
29	chr11:86229800-86231600	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr11:86229800-86231600	Enhancers	Ovary	ovary
31	chr11:86229800-86231800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:86229800-86231800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr11:86229800-86231800	Enhancers	Placenta Amnion	Placenta Amnion
34	chr11:86229800-86231800	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr11:86229800-86231800	Enhancers	Stomach Smooth Muscle	stomach
36	chr11:86229800-86232000	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr11:86229800-86232000	Enhancers	A549	lung
38	chr11:86229800-86232200	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr11:86230000-86231600	Enhancers	Colon Smooth Muscle	Colon
40	chr11:86230000-86231800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:86230000-86234600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:86230200-86231800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:86230200-86234600	Weak transcription	Stomach Mucosa	stomach
44	chr11:86230400-86231400	Enhancers	Gastric	stomach
45	chr11:86230400-86231400	Enhancers	Lung	lung
46	chr11:86230400-86231400	Enhancers	Right Atrium	heart
47	chr11:86230400-86231800	Enhancers	Left Ventricle	heart
48	chr11:86230400-86231800	Enhancers	Psoas Muscle	Psoas
49	chr11:86230600-86231400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:86230600-86231800	Enhancers	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links