Variant report

Variant	rs10898488
Chromosome Location	chr11:86223360-86223361
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:86222588..86224589-chr11:86352023..86353765,2	K562	blood:
2	chr11:86209598..86213474-chr11:86222640..86227259,4	K562	blood:
3	chr11:86221104..86225436-chr11:86225475..86228538,5	K562	blood:
4	chr11:86221748..86224210-chr11:86226851..86228577,2	MCF-7	breast:
5	chr11:86186448..86190207-chr11:86221573..86225734,3	K562	blood:
6	chr11:86222347..86226033-chr11:86510228..86514094,4	MCF-7	breast:
7	chr11:86198284..86201333-chr11:86223317..86226180,3	MCF-7	breast:
8	chr11:86221142..86225436-chr11:86225475..86228641,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1006586	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1006587	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10444371	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10444372	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10444373	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10444374	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10501622	1.00[ASN][1000 genomes]
rs10898494	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10898495	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11234668	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11234684	0.93[EUR][1000 genomes]
rs12361416	0.94[ASN][1000 genomes]
rs12362900	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421147	1.00[ASN][1000 genomes]
rs12791972	0.83[ASN][1000 genomes]
rs12792300	0.94[ASN][1000 genomes]
rs12793707	1.00[ASN][1000 genomes]
rs12799562	1.00[ASN][1000 genomes]
rs12808738	0.83[ASN][1000 genomes]
rs17149169	1.00[ASN][1000 genomes]
rs28895937	1.00[ASN][1000 genomes]
rs34405620	1.00[ASN][1000 genomes]
rs35042210	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72953626	1.00[ASN][1000 genomes]
rs7926965	1.00[ASN][1000 genomes]
rs7944836	1.00[ASN][1000 genomes]
rs9645703	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86172400-86227000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:86202800-86226400	Weak transcription	Fetal Lung	lung
3	chr11:86209200-86223600	Weak transcription	Brain Angular Gyrus	brain
4	chr11:86209200-86226600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr11:86211600-86229800	Weak transcription	Brain Anterior Caudate	brain
6	chr11:86215000-86229800	Weak transcription	Lung	lung
7	chr11:86215200-86223400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr11:86215200-86226400	Weak transcription	Spleen	Spleen
9	chr11:86215400-86223400	Weak transcription	Fetal Kidney	kidney
10	chr11:86215400-86225000	Weak transcription	Psoas Muscle	Psoas
11	chr11:86215800-86230000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:86217600-86226600	Weak transcription	Aorta	Aorta
13	chr11:86218000-86228000	Weak transcription	Fetal Brain Female	brain
14	chr11:86218200-86227800	Weak transcription	Fetal Brain Male	brain
15	chr11:86218600-86225200	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr11:86218600-86226400	Weak transcription	Fetal Stomach	stomach
17	chr11:86218600-86227800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr11:86218600-86229600	Weak transcription	Brain Germinal Matrix	brain
19	chr11:86220000-86230600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:86220200-86225600	Enhancers	Stomach Mucosa	stomach
21	chr11:86220400-86226600	Weak transcription	Left Ventricle	heart
22	chr11:86220600-86223600	Enhancers	Duodenum Mucosa	Duodenum
23	chr11:86221200-86223800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:86221200-86224400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr11:86222200-86223400	Enhancers	Colon Smooth Muscle	Colon
26	chr11:86222200-86224800	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr11:86222200-86226600	Weak transcription	Adipose Nuclei	Adipose
28	chr11:86222400-86223800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:86222400-86224000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr11:86222400-86227000	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr11:86222600-86223600	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr11:86222600-86223600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:86222600-86223800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
34	chr11:86222600-86223800	Weak transcription	Fetal Heart	heart
35	chr11:86222600-86226400	Weak transcription	NHLF	lung
36	chr11:86222600-86226600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:86222600-86226600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr11:86222800-86224000	ZNF genes & repeats	A549	lung
39	chr11:86222800-86224600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:86222800-86225400	Weak transcription	HUVEC	blood vessel
41	chr11:86222800-86226200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:86222800-86226200	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr11:86222800-86226400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr11:86222800-86226600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:86222800-86226600	Weak transcription	Fetal Intestine Large	intestine
46	chr11:86222800-86227000	Weak transcription	Ovary	ovary
47	chr11:86222800-86227200	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr11:86223000-86223400	ZNF genes & repeats	HMEC	breast
49	chr11:86223000-86223800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
50	chr11:86223000-86224400	Weak transcription	Small Intestine	intestine

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