Variant report

Variant	rs628449
Chromosome Location	chr11:86236592-86236593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86013660..86015868-chr11:86235501..86237829,2	K562	blood:
2	chr11:86197110..86198736-chr11:86234162..86236654,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149196	Chromatin interaction

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1006586	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs1006587	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs10444371	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[YRI][hapmap]
rs10444372	0.90[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.86[YRI][hapmap]
rs10501622	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs10898496	0.90[CEU][hapmap]
rs11234643	1.00[CHB][hapmap]
rs11234668	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs12420965	1.00[CHB][hapmap]
rs12799562	1.00[CHB][hapmap];0.83[JPT][hapmap];0.87[YRI][hapmap]
rs17149169	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs1841066	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2279046	0.81[ASN][1000 genomes]
rs2446228	0.88[ASN][1000 genomes]
rs2446229	0.94[ASN][1000 genomes]
rs2446231	0.95[ASN][1000 genomes]
rs2511090	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs36043971	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3758878	1.00[CHB][hapmap]
rs3824952	1.00[CHB][hapmap]
rs498981	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs501362	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs502749	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs503583	0.83[ASN][1000 genomes]
rs509870	0.86[ASN][1000 genomes]
rs511884	0.84[ASN][1000 genomes]
rs525764	0.88[ASN][1000 genomes]
rs531908	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs535652	0.84[ASN][1000 genomes]
rs553351	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs582976	0.84[ASN][1000 genomes]
rs585527	0.83[ASN][1000 genomes]
rs588287	0.85[ASN][1000 genomes]
rs589174	0.86[CEU][hapmap]
rs589368	0.84[ASN][1000 genomes]
rs593853	0.93[ASN][1000 genomes]
rs594106	0.83[ASN][1000 genomes]
rs596056	0.85[ASN][1000 genomes]
rs597296	0.83[ASN][1000 genomes]
rs597793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs598187	0.83[ASN][1000 genomes]
rs601824	0.95[ASN][1000 genomes]
rs603890	0.83[ASN][1000 genomes]
rs605618	0.84[ASN][1000 genomes]
rs608180	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs609848	0.95[ASN][1000 genomes]
rs610842	0.89[ASN][1000 genomes]
rs612163	0.83[ASN][1000 genomes]
rs613412	0.95[ASN][1000 genomes]
rs616018	0.98[ASN][1000 genomes]
rs61904415	0.84[ASN][1000 genomes]
rs619195	0.84[ASN][1000 genomes]
rs619472	0.90[ASN][1000 genomes]
rs623478	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs624236	0.95[ASN][1000 genomes]
rs624843	0.89[ASN][1000 genomes]
rs624870	0.82[ASN][1000 genomes]
rs625925	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs628406	0.84[ASN][1000 genomes]
rs630438	0.88[ASN][1000 genomes]
rs635934	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs636485	0.83[ASN][1000 genomes]
rs638041	0.83[ASN][1000 genomes]
rs640310	0.83[ASN][1000 genomes]
rs642278	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs643950	0.82[ASN][1000 genomes]
rs644086	0.87[ASN][1000 genomes]
rs646691	0.80[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs646798	0.83[ASN][1000 genomes]
rs648798	0.84[ASN][1000 genomes]
rs653779	0.83[ASN][1000 genomes]
rs655868	0.82[ASN][1000 genomes]
rs655934	0.94[ASN][1000 genomes]
rs658166	0.95[ASN][1000 genomes]
rs659405	0.91[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs661083	0.83[ASN][1000 genomes]
rs661972	0.83[ASN][1000 genomes]
rs662361	0.81[ASN][1000 genomes]
rs668270	0.83[ASN][1000 genomes]
rs668272	0.86[CEU][hapmap]
rs670602	0.88[ASN][1000 genomes]
rs674250	0.83[ASN][1000 genomes]
rs679382	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs680846	0.84[ASN][1000 genomes]
rs681158	0.83[ASN][1000 genomes]
rs687804	0.94[ASN][1000 genomes]
rs689039	0.81[ASN][1000 genomes]
rs694952	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7112309	1.00[CHB][hapmap]
rs7130920	0.84[ASN][1000 genomes]
rs7944836	1.00[CHB][hapmap]
rs9645702	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9645703	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv528182	chr11:86234604-86259006	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86223000-86238200	Weak transcription	Pancreas	Pancrea
2	chr11:86223800-86236800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:86223800-86237000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:86231400-86237400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:86231800-86236600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:86231800-86237000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:86231800-86237200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:86231800-86259000	Weak transcription	Left Ventricle	heart
9	chr11:86232200-86238600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:86232200-86250600	Weak transcription	Right Ventricle	heart
11	chr11:86234200-86236600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:86235600-86238000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:86235800-86236600	Weak transcription	Fetal Intestine Small	intestine
14	chr11:86236000-86236600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr11:86236000-86236600	Enhancers	NH-A	brain
16	chr11:86236000-86236600	Enhancers	NHEK	skin
17	chr11:86236000-86237000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:86236000-86259000	Weak transcription	Ovary	ovary
19	chr11:86236200-86236600	Enhancers	Hela-S3	cervix
20	chr11:86236200-86236800	Weak transcription	Fetal Stomach	stomach
21	chr11:86236200-86236800	Enhancers	HUVEC	blood vessel
22	chr11:86236200-86237600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:86236200-86238400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:86236200-86238600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr11:86236200-86258600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:86236400-86236800	Enhancers	A549	lung
27	chr11:86236400-86240600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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