Variant report

Variant	rs625925
Chromosome Location	chr11:86229908-86229909
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86227984..86231236-chr11:86233662..86235563,3	MCF-7	breast:
2	chr11:86209488..86213127-chr11:86228780..86231761,3	K562	blood:
3	chr11:86224834..86227420-chr11:86229553..86231855,2	K562	blood:
4	chr11:86225920..86228246-chr11:86229553..86231799,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs147045	0.85[CHB][hapmap]
rs1841066	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[ASN][1000 genomes]
rs2279046	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs2446226	0.82[ASN][1000 genomes]
rs2446228	0.89[CHB][hapmap];0.91[ASN][1000 genomes]
rs2446229	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2446231	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2511090	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36043971	0.84[ASN][1000 genomes]
rs498981	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs501362	0.97[ASN][1000 genomes]
rs502749	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs503583	0.84[CHB][hapmap];0.86[ASN][1000 genomes]
rs509870	0.83[ASN][1000 genomes]
rs511884	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs525764	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs531908	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs535652	0.86[CEU][hapmap];0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs553351	0.95[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap];0.90[ASN][1000 genomes]
rs582976	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs585527	0.86[ASN][1000 genomes]
rs588287	0.86[CEU][hapmap];0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs589174	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs589368	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs590401	0.84[CHB][hapmap]
rs593853	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs594106	0.81[ASN][1000 genomes]
rs596056	0.85[CHB][hapmap];0.88[ASN][1000 genomes]
rs597296	0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs597793	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs598187	0.86[ASN][1000 genomes]
rs601824	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs603890	0.86[ASN][1000 genomes]
rs605251	0.84[CHB][hapmap]
rs605618	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs606546	0.82[ASN][1000 genomes]
rs608180	0.84[ASN][1000 genomes]
rs609848	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs610842	0.95[CHB][hapmap];0.92[ASN][1000 genomes]
rs612163	0.89[CHB][hapmap];0.86[ASN][1000 genomes]
rs613412	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs616018	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs618513	0.84[CHB][hapmap]
rs61904415	0.83[ASN][1000 genomes]
rs619195	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs619472	0.90[ASN][1000 genomes]
rs623478	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs624236	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs624843	0.95[CHB][hapmap];0.92[ASN][1000 genomes]
rs624870	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs628406	0.87[CEU][hapmap];0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs628449	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs630438	0.91[ASN][1000 genomes]
rs632538	0.83[ASN][1000 genomes]
rs634509	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs635934	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636485	0.80[CHB][hapmap];0.86[ASN][1000 genomes]
rs638041	0.89[CHB][hapmap];0.86[ASN][1000 genomes]
rs640310	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs642278	0.94[ASN][1000 genomes]
rs643950	0.84[ASN][1000 genomes]
rs644086	0.90[ASN][1000 genomes]
rs646691	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646798	0.86[ASN][1000 genomes]
rs648798	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs651089	0.84[CHB][hapmap]
rs653779	0.89[CHB][hapmap];0.86[ASN][1000 genomes]
rs655868	0.82[ASN][1000 genomes]
rs655934	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs658166	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs659405	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs661083	0.86[ASN][1000 genomes]
rs661972	0.86[ASN][1000 genomes]
rs662361	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs663262	0.83[CHB][hapmap]
rs668270	0.86[ASN][1000 genomes]
rs668272	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs670602	0.91[ASN][1000 genomes]
rs674250	0.86[ASN][1000 genomes]
rs677700	0.83[CHB][hapmap]
rs679076	0.84[CHB][hapmap]
rs679382	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs680846	0.82[ASN][1000 genomes]
rs681158	0.86[ASN][1000 genomes]
rs687804	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs689039	0.84[ASN][1000 genomes]
rs694952	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130920	0.95[CHB][hapmap];0.87[ASN][1000 genomes]
rs9645702	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86215800-86230000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:86220000-86230600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:86223000-86238200	Weak transcription	Pancreas	Pancrea
4	chr11:86223200-86230600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:86223800-86236800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr11:86223800-86237000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:86224600-86230000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:86224600-86230000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:86224800-86232400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:86225000-86230200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:86225400-86231000	Enhancers	NHEK	skin
12	chr11:86225400-86233200	Enhancers	HUVEC	blood vessel
13	chr11:86225600-86230800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:86225800-86231400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:86226200-86231600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:86226400-86231400	Enhancers	Osteobl	bone
17	chr11:86227000-86230200	Weak transcription	Adipose Nuclei	Adipose
18	chr11:86227000-86230800	Weak transcription	Spleen	Spleen
19	chr11:86227000-86234800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr11:86227000-86235000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:86227000-86235600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:86227400-86230200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:86227400-86230400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:86227800-86231800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:86228000-86231000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr11:86228000-86232000	Enhancers	Hela-S3	cervix
27	chr11:86228200-86231000	Enhancers	Fetal Intestine Large	intestine
28	chr11:86228400-86230000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:86228600-86231200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr11:86229200-86230200	Enhancers	Stomach Mucosa	stomach
31	chr11:86229200-86231000	Enhancers	Fetal Kidney	kidney
32	chr11:86229200-86231400	Enhancers	Fetal Muscle Leg	muscle
33	chr11:86229200-86231800	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr11:86229200-86232000	Enhancers	Fetal Lung	lung
35	chr11:86229400-86231400	Enhancers	Fetal Brain Female	brain
36	chr11:86229400-86231400	Enhancers	Fetal Stomach	stomach
37	chr11:86229400-86231800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:86229400-86231800	Enhancers	Fetal Brain Male	brain
39	chr11:86229400-86232200	Enhancers	Fetal Heart	heart
40	chr11:86229600-86230400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:86229600-86230800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:86229600-86231000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:86229600-86231000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr11:86229600-86231000	Enhancers	Placenta	Placenta
45	chr11:86229600-86231000	Enhancers	HMEC	breast
46	chr11:86229600-86231000	Enhancers	HSMMtube	muscle
47	chr11:86229600-86231200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:86229600-86231200	Enhancers	Muscle Satellite Cultured Cells	--
49	chr11:86229600-86231200	Enhancers	Small Intestine	intestine
50	chr11:86229600-86231400	Enhancers	NH-A	brain

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