Variant report

Variant	rs663262
Chromosome Location	chr11:86179076-86179077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86174318..86177254-chr11:86179008..86180936,2	MCF-7	breast:
2	chr11:86178752..86182800-chr11:86185085..86187353,3	MCF-7	breast:
3	chr11:86174332..86177308-chr11:86177532..86180145,2	K562	blood:
4	chr11:86170892..86174262-chr11:86177724..86181309,3	MCF-7	breast:
5	chr11:86177770..86180382-chr11:86184781..86186333,2	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10431169	0.82[CEU][hapmap];0.95[CHB][hapmap]
rs10501619	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs10501620	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10501621	0.82[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.88[EUR][1000 genomes]
rs10898480	0.95[CHB][hapmap]
rs147045	0.95[CHB][hapmap]
rs1841066	0.90[CHB][hapmap]
rs2279046	0.95[CHB][hapmap]
rs2446228	0.95[CHB][hapmap]
rs2446229	0.90[CHB][hapmap]
rs3781812	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs498981	0.90[CHB][hapmap]
rs503583	0.95[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs509870	0.89[AMR][1000 genomes]
rs511884	0.82[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes]
rs525764	0.82[CEU][hapmap];0.90[CHB][hapmap]
rs535652	0.95[CHB][hapmap];0.92[JPT][hapmap]
rs553351	0.90[CHB][hapmap]
rs561237	0.83[AMR][1000 genomes]
rs582976	0.82[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes]
rs584068	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs588287	0.95[CHB][hapmap];0.92[JPT][hapmap]
rs589174	0.91[CHB][hapmap]
rs589368	0.82[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes]
rs590401	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs593853	0.91[CHB][hapmap]
rs594106	0.83[AMR][1000 genomes]
rs596056	0.95[CHB][hapmap]
rs597296	0.82[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs601300	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs601824	0.91[CHB][hapmap]
rs603890	0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs605251	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs605618	0.82[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes]
rs609848	0.90[CHB][hapmap]
rs610842	0.90[CHB][hapmap]
rs612163	0.82[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61598129	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs616018	0.90[CHB][hapmap]
rs618513	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs619195	0.82[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs623478	0.90[CHB][hapmap]
rs624843	0.91[CHB][hapmap]
rs624870	0.82[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes]
rs625925	0.83[CHB][hapmap]
rs628406	0.95[CHB][hapmap];0.92[JPT][hapmap]
rs634509	0.95[CHB][hapmap]
rs636485	0.82[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs638041	0.82[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs638135	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs640310	0.82[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.97[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs644086	0.85[CHB][hapmap]
rs646798	0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs648798	0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes]
rs651089	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs653779	0.82[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs655934	0.90[CHB][hapmap]
rs659405	0.91[CHB][hapmap]
rs660893	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs661083	0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs661972	0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs662361	0.95[CHB][hapmap]
rs668270	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs668272	0.90[CHB][hapmap]
rs674250	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs677700	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs679076	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs681158	0.94[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs687804	0.90[CHB][hapmap]
rs689039	0.97[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7130920	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86153200-86187000	Weak transcription	Fetal Kidney	kidney
2	chr11:86157000-86179800	Weak transcription	Fetal Intestine Large	intestine
3	chr11:86158600-86187200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:86159600-86196800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:86160200-86221000	Weak transcription	Primary T cells from cord blood	blood
6	chr11:86170200-86187200	Weak transcription	Stomach Mucosa	stomach
7	chr11:86171200-86197800	Weak transcription	Esophagus	oesophagus
8	chr11:86171600-86180400	Weak transcription	Gastric	stomach
9	chr11:86171800-86187200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:86171800-86188800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:86172000-86180600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:86172200-86180600	Weak transcription	Osteobl	bone
13	chr11:86172200-86181000	Weak transcription	NHDF-Ad	bronchial
14	chr11:86172200-86184800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr11:86172200-86208200	Weak transcription	Pancreas	Pancrea
16	chr11:86172400-86183400	Weak transcription	Fetal Heart	heart
17	chr11:86172400-86192800	Weak transcription	Brain Anterior Caudate	brain
18	chr11:86172400-86208400	Weak transcription	Brain Angular Gyrus	brain
19	chr11:86172400-86227000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:86172600-86180400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:86172600-86180600	Weak transcription	Fetal Lung	lung
22	chr11:86172600-86180800	Weak transcription	Right Ventricle	heart
23	chr11:86172600-86184600	Weak transcription	HSMM	muscle
24	chr11:86172600-86187200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:86172600-86194800	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:86172800-86180400	Weak transcription	Fetal Muscle Leg	muscle
27	chr11:86172800-86180800	Weak transcription	Spleen	Spleen
28	chr11:86172800-86184800	Weak transcription	HUVEC	blood vessel
29	chr11:86172800-86188800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:86173600-86180600	Weak transcription	Small Intestine	intestine
31	chr11:86173800-86180200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:86174600-86180600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:86174600-86181000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr11:86174600-86185000	Weak transcription	Lung	lung
35	chr11:86174600-86187200	Weak transcription	Fetal Intestine Small	intestine
36	chr11:86174600-86187200	Weak transcription	Fetal Stomach	stomach
37	chr11:86174600-86188800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr11:86174800-86180800	Weak transcription	Stomach Smooth Muscle	stomach
39	chr11:86174800-86185400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:86175400-86195400	Weak transcription	Brain Germinal Matrix	brain
41	chr11:86175600-86180200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:86175800-86180400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr11:86175800-86184600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr11:86176000-86184600	Weak transcription	Adipose Nuclei	Adipose
45	chr11:86176200-86180400	Weak transcription	Ovary	ovary
46	chr11:86176200-86180600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:86176200-86180800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr11:86176200-86185000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:86176200-86187200	Weak transcription	Fetal Brain Female	brain
50	chr11:86176400-86180400	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links