Variant report

Variant	rs3781812
Chromosome Location	chr11:86164830-86164831
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86072001..86072519-chr11:86164057..86164978,2	MCF-7	breast:
2	chr11:86160987..86162784-chr11:86164808..86167702,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1026243	0.80[CHB][hapmap]
rs10431169	0.95[CHB][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs10501619	0.88[ASW][hapmap];0.92[JPT][hapmap];0.97[LWK][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs10501620	1.00[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.97[LWK][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10501621	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10898480	0.95[CHB][hapmap];0.88[CHD][hapmap];0.82[ASN][1000 genomes]
rs12417575	0.81[GIH][hapmap]
rs147045	0.86[CHB][hapmap]
rs1841066	0.82[CHB][hapmap]
rs2279046	0.86[CHB][hapmap];0.83[CHD][hapmap]
rs2446228	0.86[CHB][hapmap];0.85[CHD][hapmap]
rs2446229	0.82[CHB][hapmap];0.85[CHD][hapmap]
rs498981	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs503583	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs511884	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs525764	0.81[CHB][hapmap]
rs535652	0.86[CHB][hapmap];0.82[CHD][hapmap];0.84[JPT][hapmap]
rs553351	0.82[CHB][hapmap]
rs582976	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs588287	0.86[CHB][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap]
rs589174	0.82[CHB][hapmap]
rs589368	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs590401	0.90[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs593853	0.82[CHB][hapmap]
rs596056	0.86[CHB][hapmap]
rs597296	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs601824	0.82[CHB][hapmap]
rs605251	0.90[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs605618	0.86[CHB][hapmap];0.85[CHD][hapmap];0.84[JPT][hapmap]
rs609848	0.82[CHB][hapmap];0.85[CHD][hapmap]
rs610842	0.82[CHB][hapmap];0.85[CHD][hapmap]
rs612163	0.86[CHB][hapmap];0.91[CHD][hapmap];0.84[JPT][hapmap]
rs61294211	0.88[ASN][1000 genomes]
rs61598129	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs616018	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs618513	0.90[CHB][hapmap];0.88[CHD][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs619195	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs623478	0.82[CHB][hapmap];0.85[CHD][hapmap]
rs624843	0.82[CHB][hapmap]
rs624870	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs628406	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs634509	0.86[CHB][hapmap];0.83[CHD][hapmap]
rs636485	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs638041	0.86[CHB][hapmap];0.88[CHD][hapmap];0.84[JPT][hapmap]
rs640310	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs644086	0.83[CHD][hapmap]
rs648798	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs651089	0.90[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs653779	0.86[CHB][hapmap];0.91[CHD][hapmap];0.84[JPT][hapmap]
rs655934	0.82[CHB][hapmap];0.85[CHD][hapmap]
rs659405	0.82[CHB][hapmap]
rs662361	0.86[CHB][hapmap];0.83[CHD][hapmap]
rs663262	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs668272	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs677700	0.90[CHB][hapmap];0.92[JPT][hapmap]
rs679076	0.90[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap]
rs687804	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs7130920	0.82[CHB][hapmap];0.85[CHD][hapmap]
rs7946950	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86136800-86170200	Weak transcription	Fetal Heart	heart
2	chr11:86138600-86167400	Weak transcription	Fetal Lung	lung
3	chr11:86142000-86167400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:86145400-86167400	Weak transcription	Pancreas	Pancrea
5	chr11:86150200-86167400	Weak transcription	Stomach Mucosa	stomach
6	chr11:86151800-86167400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:86151800-86167400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:86152400-86172200	Weak transcription	Fetal Brain Male	brain
9	chr11:86153200-86187000	Weak transcription	Fetal Kidney	kidney
10	chr11:86154000-86166800	Weak transcription	A549	lung
11	chr11:86154000-86167400	Weak transcription	NH-A	brain
12	chr11:86154000-86169600	Weak transcription	HSMM	muscle
13	chr11:86154000-86170800	Weak transcription	Esophagus	oesophagus
14	chr11:86154200-86167000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:86154600-86167400	Weak transcription	Hela-S3	cervix
16	chr11:86154600-86170600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr11:86154800-86171000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr11:86155000-86167400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:86156400-86167400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr11:86156600-86167400	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:86156800-86169400	Weak transcription	Osteobl	bone
22	chr11:86157000-86167400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:86157000-86179800	Weak transcription	Fetal Intestine Large	intestine
24	chr11:86157400-86170800	Weak transcription	Psoas Muscle	Psoas
25	chr11:86157800-86166400	Weak transcription	Brain Hippocampus Middle	brain
26	chr11:86158000-86170800	Weak transcription	Fetal Muscle Trunk	muscle
27	chr11:86158200-86167600	Weak transcription	Spleen	Spleen
28	chr11:86158600-86167400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:86158600-86167400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:86158600-86167400	Weak transcription	Fetal Muscle Leg	muscle
31	chr11:86158600-86167400	Weak transcription	Left Ventricle	heart
32	chr11:86158600-86167400	Weak transcription	Ovary	ovary
33	chr11:86158600-86167400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr11:86158600-86169000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:86158600-86169600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:86158600-86170400	Weak transcription	Brain Anterior Caudate	brain
37	chr11:86158600-86170800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr11:86158600-86170800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:86158600-86171000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr11:86158600-86171000	Weak transcription	Gastric	stomach
41	chr11:86158600-86187200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr11:86158800-86167400	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr11:86158800-86168200	Weak transcription	Aorta	Aorta
44	chr11:86159200-86170800	Weak transcription	Fetal Intestine Small	intestine
45	chr11:86159400-86167400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:86159400-86167400	Weak transcription	Right Ventricle	heart
47	chr11:86159600-86167400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr11:86159600-86170800	Weak transcription	Lung	lung
49	chr11:86159600-86196800	Weak transcription	Primary hematopoietic stem cells	blood
50	chr11:86159800-86166800	Weak transcription	Fetal Stomach	stomach

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