Variant report

Variant	rs10898480
Chromosome Location	chr11:86107810-86107811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86104109..86106068-chr11:86107101..86109477,2	MCF-7	breast:
2	chr11:86107626..86109669-chr11:86164966..86167239,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1026243	0.85[CHB][hapmap]
rs10431169	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10501619	0.82[CEU][hapmap]
rs10501620	0.82[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.83[ASN][1000 genomes]
rs10501621	0.82[CEU][hapmap];0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs147045	0.82[CHB][hapmap]
rs2279046	0.82[CHB][hapmap]
rs2446228	0.82[CHB][hapmap]
rs3781812	0.95[CHB][hapmap];0.88[CHD][hapmap];0.82[ASN][1000 genomes]
rs503583	0.81[CHB][hapmap]
rs511884	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs525764	0.82[CEU][hapmap]
rs535652	0.82[CHB][hapmap]
rs582976	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs588287	0.82[CHB][hapmap]
rs589368	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs590401	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs596056	0.82[CHB][hapmap]
rs597296	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs605251	0.86[CHB][hapmap];0.85[CHD][hapmap]
rs605618	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs612163	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs61294211	0.91[ASN][1000 genomes]
rs61598129	0.87[ASN][1000 genomes]
rs618513	0.86[CHB][hapmap];0.82[CHD][hapmap]
rs619195	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs624870	0.82[CEU][hapmap]
rs628406	0.82[CHB][hapmap]
rs634509	0.82[CHB][hapmap]
rs636485	0.82[CEU][hapmap]
rs638041	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs640310	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs651089	0.86[CHB][hapmap];0.85[CHD][hapmap]
rs653779	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs662361	0.82[CHB][hapmap]
rs663262	0.95[CHB][hapmap]
rs677700	0.82[CEU][hapmap];0.85[CHB][hapmap]
rs679076	0.82[CEU][hapmap];0.86[CHB][hapmap]
rs7946950	0.89[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86104800-86108400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:86104800-86108400	Enhancers	NHDF-Ad	bronchial
3	chr11:86105000-86108000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:86105000-86108000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:86105200-86108200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:86105200-86108800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:86105400-86108600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:86105800-86108400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr11:86105800-86109400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:86106400-86108000	Enhancers	Placenta Amnion	Placenta Amnion
11	chr11:86106400-86108800	Enhancers	HUVEC	blood vessel
12	chr11:86106600-86108000	Weak transcription	Brain Anterior Caudate	brain
13	chr11:86106600-86108200	Enhancers	NH-A	brain
14	chr11:86106600-86108400	Enhancers	Osteobl	bone
15	chr11:86106600-86109000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr11:86106600-86111400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:86106600-86114800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:86106600-86134600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:86106800-86108000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:86107000-86108000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:86107000-86108800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:86107000-86110000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:86107200-86122400	Weak transcription	Aorta	Aorta
24	chr11:86107600-86108200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:86107600-86108200	Enhancers	HSMM	muscle
26	chr11:86107600-86108400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr11:86107800-86108400	Enhancers	HSMMtube	muscle
28	chr11:86107800-86111800	Weak transcription	NHLF	lung

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