Variant report

Variant	rs634509
Chromosome Location	chr11:86191420-86191421
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10431169	0.81[CHB][hapmap]
rs10501620	0.86[CHB][hapmap]
rs10501621	0.86[CHB][hapmap]
rs10898480	0.82[CHB][hapmap]
rs147045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1841066	0.95[CHB][hapmap];0.85[CHD][hapmap];0.80[GIH][hapmap]
rs2279046	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.98[ASN][1000 genomes]
rs2446226	0.98[ASN][1000 genomes]
rs2446228	1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs2446229	0.95[CHB][hapmap];0.91[CHD][hapmap];0.82[ASN][1000 genomes]
rs2446231	0.83[ASN][1000 genomes]
rs2511090	0.82[ASN][1000 genomes]
rs3781812	0.86[CHB][hapmap];0.83[CHD][hapmap]
rs498981	0.95[CHB][hapmap];0.88[CHD][hapmap];0.81[ASN][1000 genomes]
rs502749	0.81[ASN][1000 genomes]
rs503583	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs511884	0.90[CHB][hapmap]
rs525764	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs535652	0.90[CHB][hapmap];0.83[CHD][hapmap]
rs553351	0.95[CHB][hapmap];0.86[CHD][hapmap]
rs582976	0.90[CHB][hapmap]
rs585527	0.96[ASN][1000 genomes]
rs588287	0.90[CHB][hapmap];0.88[CHD][hapmap]
rs589174	0.95[CHB][hapmap]
rs589368	0.90[CHB][hapmap]
rs590401	0.95[CHB][hapmap]
rs593853	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs596056	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs597296	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs598187	0.96[ASN][1000 genomes]
rs601300	0.81[CHB][hapmap]
rs601824	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs603890	0.82[ASN][1000 genomes]
rs605251	0.95[CHB][hapmap];0.91[CHD][hapmap]
rs605618	0.90[CHB][hapmap];0.86[CHD][hapmap]
rs606546	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs609848	0.95[CHB][hapmap];0.91[CHD][hapmap];0.83[ASN][1000 genomes]
rs610842	0.95[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs612163	0.90[CHB][hapmap];0.91[CHD][hapmap];0.82[ASN][1000 genomes]
rs613412	0.83[ASN][1000 genomes]
rs616018	0.95[CHB][hapmap];0.88[CHD][hapmap];0.81[ASN][1000 genomes]
rs618513	0.95[CHB][hapmap];0.94[CHD][hapmap]
rs619195	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs619472	0.81[ASN][1000 genomes]
rs623478	0.95[CHB][hapmap];0.91[CHD][hapmap];0.83[ASN][1000 genomes]
rs624236	0.83[ASN][1000 genomes]
rs624843	0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs624870	0.86[CHB][hapmap]
rs625925	0.89[CHB][hapmap];0.82[ASN][1000 genomes]
rs628406	0.90[CHB][hapmap]
rs630438	0.90[ASN][1000 genomes]
rs632538	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs635934	0.82[ASN][1000 genomes]
rs636485	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs638041	0.90[CHB][hapmap];0.88[CHD][hapmap];0.82[ASN][1000 genomes]
rs640310	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs644086	0.90[CHB][hapmap];0.94[CHD][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs646691	0.82[ASN][1000 genomes]
rs646798	0.82[ASN][1000 genomes]
rs648798	0.95[CHB][hapmap]
rs651089	0.95[CHB][hapmap];0.91[CHD][hapmap]
rs653779	0.90[CHB][hapmap];0.91[CHD][hapmap];0.82[ASN][1000 genomes]
rs655934	0.95[CHB][hapmap];0.91[CHD][hapmap];0.84[ASN][1000 genomes]
rs658166	0.83[ASN][1000 genomes]
rs659405	0.95[CHB][hapmap]
rs661083	0.82[ASN][1000 genomes]
rs661972	0.82[ASN][1000 genomes]
rs662361	0.81[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.81[MKK][hapmap];0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs663262	0.95[CHB][hapmap]
rs668270	0.82[ASN][1000 genomes]
rs668272	0.95[CHB][hapmap];0.88[CHD][hapmap]
rs670602	0.90[ASN][1000 genomes]
rs672526	1.00[CEU][hapmap];0.85[GIH][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes]
rs674250	0.82[ASN][1000 genomes]
rs677700	0.95[CHB][hapmap]
rs679076	0.95[CHB][hapmap];0.91[CHD][hapmap];0.87[ASN][1000 genomes]
rs679382	0.82[ASN][1000 genomes]
rs681158	0.82[ASN][1000 genomes]
rs687804	0.95[CHB][hapmap];0.88[CHD][hapmap];0.83[ASN][1000 genomes]
rs689039	0.80[ASN][1000 genomes]
rs694952	0.82[ASN][1000 genomes]
rs7130920	0.95[CHB][hapmap];0.91[CHD][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86159600-86196800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:86160200-86221000	Weak transcription	Primary T cells from cord blood	blood
3	chr11:86171200-86197800	Weak transcription	Esophagus	oesophagus
4	chr11:86172200-86208200	Weak transcription	Pancreas	Pancrea
5	chr11:86172400-86192800	Weak transcription	Brain Anterior Caudate	brain
6	chr11:86172400-86208400	Weak transcription	Brain Angular Gyrus	brain
7	chr11:86172400-86227000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:86172600-86194800	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:86175400-86195400	Weak transcription	Brain Germinal Matrix	brain
10	chr11:86176600-86197000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:86181800-86208800	Weak transcription	Gastric	stomach
12	chr11:86185200-86191600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:86185600-86193800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:86185800-86195000	Weak transcription	Lung	lung
15	chr11:86186400-86197000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr11:86187600-86201200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:86187600-86218600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:86187800-86195000	Weak transcription	Brain Substantia Nigra	brain
19	chr11:86187800-86196000	Weak transcription	Fetal Brain Female	brain
20	chr11:86187800-86203200	Weak transcription	Fetal Heart	heart
21	chr11:86188000-86195800	Weak transcription	Fetal Intestine Large	intestine
22	chr11:86188000-86210400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr11:86188200-86195400	Weak transcription	Fetal Intestine Small	intestine
24	chr11:86188800-86195000	Weak transcription	Fetal Brain Male	brain
25	chr11:86189200-86191600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:86189200-86191600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:86189200-86191800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:86189200-86192400	Weak transcription	A549	lung
29	chr11:86189200-86194200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr11:86189200-86194600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:86189200-86194800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr11:86189200-86197400	Weak transcription	Fetal Lung	lung
33	chr11:86189200-86222600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:86189400-86191600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:86189400-86192000	Weak transcription	Fetal Muscle Leg	muscle
36	chr11:86189400-86192200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr11:86189400-86192200	Weak transcription	NHLF	lung
38	chr11:86189400-86192400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:86189400-86192400	Weak transcription	HSMM	muscle
40	chr11:86189400-86192600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:86189400-86194800	Weak transcription	Adipose Nuclei	Adipose
42	chr11:86189400-86194800	Weak transcription	Spleen	Spleen
43	chr11:86189400-86195600	Weak transcription	Fetal Kidney	kidney
44	chr11:86189400-86206400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:86189600-86191800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr11:86189600-86192400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:86189600-86192400	Weak transcription	NH-A	brain
48	chr11:86189600-86192800	Weak transcription	Osteobl	bone
49	chr11:86189600-86193600	Weak transcription	Fetal Stomach	stomach
50	chr11:86189600-86193800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links