Variant report

Variant	rs511884
Chromosome Location	chr11:86246746-86246747
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10431169	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs10501619	1.00[CEU][hapmap]
rs10501620	1.00[CEU][hapmap];0.86[CHB][hapmap]
rs10501621	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs10898480	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs147045	0.91[CHB][hapmap]
rs1791443	0.89[ASN][1000 genomes]
rs1841066	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs2279046	0.90[CHB][hapmap]
rs2446228	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs2446229	0.95[CHB][hapmap];0.80[ASN][1000 genomes]
rs2446231	0.82[ASN][1000 genomes]
rs2511090	0.82[ASN][1000 genomes]
rs3781812	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs498981	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs501362	0.85[ASN][1000 genomes]
rs502749	0.83[ASN][1000 genomes]
rs503583	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs509870	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs525764	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs531908	0.84[ASN][1000 genomes]
rs535652	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs553351	0.95[CHB][hapmap];0.90[ASN][1000 genomes]
rs561237	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs582976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs584068	0.88[AMR][1000 genomes]
rs588287	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs589174	0.95[CHB][hapmap]
rs589368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs590401	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs593853	0.95[CHB][hapmap];0.80[ASN][1000 genomes]
rs594106	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs596056	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs597296	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs597793	0.85[ASN][1000 genomes]
rs601300	0.91[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs601824	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs603890	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs605251	0.95[CHB][hapmap];0.92[JPT][hapmap]
rs605618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs609848	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs610842	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs612163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs613412	0.82[ASN][1000 genomes]
rs616018	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs618513	0.95[CHB][hapmap];0.92[JPT][hapmap]
rs61904415	0.99[ASN][1000 genomes]
rs619195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs619472	0.90[ASN][1000 genomes]
rs623478	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs624236	0.82[ASN][1000 genomes]
rs624843	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs624870	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs625925	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs628406	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs628449	0.84[ASN][1000 genomes]
rs630438	0.84[ASN][1000 genomes]
rs634509	0.90[CHB][hapmap]
rs635934	0.82[ASN][1000 genomes]
rs636485	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs638041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs638135	0.88[AMR][1000 genomes]
rs640310	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs642278	0.83[ASN][1000 genomes]
rs643950	0.95[ASN][1000 genomes]
rs644086	0.81[CHB][hapmap];0.83[ASN][1000 genomes]
rs646691	0.82[ASN][1000 genomes]
rs646798	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs648798	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs651089	0.95[CHB][hapmap];0.92[JPT][hapmap]
rs653779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs655868	0.97[ASN][1000 genomes]
rs655934	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs658166	0.82[ASN][1000 genomes]
rs659405	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs659700	0.85[ASN][1000 genomes]
rs661083	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs661972	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs662361	0.90[CHB][hapmap]
rs663262	0.82[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes]
rs668270	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs668272	0.95[CHB][hapmap]
rs670602	0.84[ASN][1000 genomes]
rs674250	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs677700	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes]
rs679076	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs679382	0.82[ASN][1000 genomes]
rs680846	0.97[ASN][1000 genomes]
rs681158	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs687804	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs689039	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs694952	0.82[ASN][1000 genomes]
rs7130920	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs9645702	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv898056	chr11:86156848-86304402	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv528182	chr11:86234604-86259006	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86231800-86259000	Weak transcription	Left Ventricle	heart
2	chr11:86232200-86250600	Weak transcription	Right Ventricle	heart
3	chr11:86236000-86259000	Weak transcription	Ovary	ovary
4	chr11:86236200-86258600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:86237800-86262200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:86238000-86258800	Weak transcription	Fetal Stomach	stomach
7	chr11:86241800-86259000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:86244800-86258800	Weak transcription	Adipose Nuclei	Adipose
9	chr11:86244800-86258800	Weak transcription	Brain Angular Gyrus	brain
10	chr11:86245600-86258800	Weak transcription	Aorta	Aorta
11	chr11:86246200-86246800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:86246200-86247200	ZNF genes & repeats	A549	lung

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